1 5' 3' | 2 5' 3' | 3 5' 3' |
CCCGTATAGTGCCTTGCTGTCAGTTGCATGGACGGGCTGACGGACGAGCAGAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctatctctcctaccgtcttctctcgccatggctgatggcttagctactagcttgctttttatttgatttttgtgcttgttcttcagatcgtacg...
species | Zea mays |
transcript | GRMZM2G149923_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGCCTTCTCGCTCTTCGAC-AGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGCTCCCTCGGTCTCGEST: gi|211012915|gb|FL112608.1|FL112608
genomic: AGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGCTCCCTCGGTCTCGEST: gi|211012910|gb|FL112603.1|FL112603
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCGEST: gi|4887307|gb|AI677406.1|AI677406
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTTTTCGCCAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGCTCCCTCGGTCTCGEST: gi|211505742|gb|FL354865.1|FL354865
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACTCGCTCCCTCGGTCTCGEST: gi|211015687|gb|FL112613.1|FL112613
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCGEST: gi|211012913|gb|FL112606.1|FL112606
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAAGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGCTCCCTCGGTCTCGEST: gi|78026108|gb|DV494495.1|DV494495
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGCTCCCTCGGTCTCGEST: gi|211015685|gb|FL112611.1|FL112611
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGCTCCCTCGGTCTCGEST: gi|211015686|gb|FL112612.1|FL112612
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCGEST: gi|211012908|gb|FL112601.1|FL112601
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGCTCCCTCGGTCTCGEST: gi|211012909|gb|FL112602.1|FL112602
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCGEST: gi|211012916|gb|FL112609.1|FL112609
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCGEST: gi|211012914|gb|FL112607.1|FL112607
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGCTCCCTCGGTCTCGEST: gi|211012911|gb|FL112604.1|FL112604
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCGEST: gi|211012917|gb|FL112610.1|FL112610
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
EST: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACG GATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGCTCCCTCGGTCTCG
genomic: GAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctat ... ccaagtgtagGATGCATCACCATGGAAGAGCTGGCCGCAGTCACCCGTTCCCTCGGTCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGTATAGTGCCTTGCTGTCAGTTGCATGGACGGGCTGACGGACGAGCAGAGGCTCGCGTTCCAGGAGGCCTTCTCGCTCTTCGACAAGAACGGCGACGgtatctctatctctcctaccgtcttctctcgccatggctgatggcttagctactagcttgctttttatttgatttttgtgcttgttcttcagatcgtacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctacc