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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAATTACTCACTCTAATGTATGAAAAGGCAAGGTAGAAGATGCTACCAAAGTACAGACGCTTCTGTTCAGTGCCACTCTGCCAGAGTGGGTGAATAAGgtaagatcattttataggactttcatatttttaaatattttttggactatttttgtgagctgacaatttgatttggaattattgtag

Basic information

species Zea mays
transcript GRMZM2G149520_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149520_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g34910.1 (Oryza sativa), 5'ss of exon 5
TTTAATTACTCACTCTAATGTATGAAAAGGCAAGGTAGAAGATGCTACCAAAGTACAGACGCTTCTGTTCAGTGCCACTCTGCCAGAGTGGGTGAATAAGgtaagatcattttataggactttcatatttttaaatattttttggactatttttgtg-agctgacaat---ttgatttgga-attattgtag------
                             |||| || ||||||| ||| ||||||||||| ||||| ||||| || ||| | |||||||||||||| |||||  |  ||| ||  |   |  |     |||   || || |||    |||| |||||  ||||| |||   | | | ||||   | |  | |      
-----------------------------GCAAAGTTGAAGATGTTACAAAAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAGgtgcggacatctttaaaatccatttctctttctgattttctttaa--tattattgtgtggctgataatatatcggtatggatgctgtgatggttatag