Sequence
atgc intronic sequence ATGC exonic sequenceCCGAGGTTGCGTGCGTGATTGGGATGGCGGAGCCGGGGCTCGAGGACAGCCAGCCGGTGGATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCAgtaagtcccggatctgggtcgtctggggttaggggttgcggagagatcccgtgccgtacgtgctagggtcgcgcggcggatggcggtgcttgggttccct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 1
CCGAGGTTGCGTGCGTGATTGGGATGGCGGAGCCGGGGCTCGAGGACAGCCAGCCGGTGGATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCAgtaagtcccggatctgggtcg-tctgggg-----ttaggggttgcg-gagagatcccgtgccgtacgtgctagggtcgcgcggcggatggcggtgcttgggttccct
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--------------ATGGCGGCGGAGGCGGCAGCGGCGCTGGAGGGGAGCGAGCCCGTGGACCTGGCCAAGCACCCCTCCGGCATCATCCCCACGCTCCAgtaagtcccggatctgcgcggatctgcgggattcctgtgggtggggtgagagattcggtccgcggggggatttggggtccttttagcttgttgtgtgttg-------
upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 5'ss of exon 1
CCGAGGTTGCGTGCGTGATTGGGATGGCGGAGCCGGGGCTCGAGGACAGCCAGCCGGTGGATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCAgtaagtcccggatctgggtcgtctggggttaggggttgcggagagatcccgtgccgtacgtgctagggtcgcgcggcgga-tggcggtgcttgggttccct--
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TGGCGGCGGCGGAGGCGGCGGCGGAGGCGGCGGCGGCGCTGGAGGGGAGCGAGCCCGTGGACCTGGTCAAGCACCCCTCCGGCATCATCCCCACGCTCCAgtaagtcccc--cccgcccccgcccggatctgtatgtgcgggttcatcgagctggttgagt-ttgaggtggagcggttaactcgtcgcgcgctgttgatttgg
upper sequence: GRMZM2G149238_T04 (Zea mays), 5'ss of exon 1
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 2
CCGAGGTTGCGTGCGTGATTG--GGATGGCGGAGCCGGGGCTCGAGGACAGCCAGCCGGTGGATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCAgtaagtcccggatctgggtcgtctggggttaggggttgcggagagatcccgtgccgtacgtgctagggtcgcgcggcggatggcggtgcttgggttccct-----
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CAAAGATTG-GTA-GTGATTGAAGAATGGCGGATCAAGTTTTGGAAGGGAGCCAACCGGTGGATCTCTCCAAGCATCCATCTGGAATCATACCCACGCTCCAgtaagttccggatcttctccgtctctttttgtctattc----gaacccacggaaagga-gaatcagagaaaagaggggagtcctgagattggggtctctttgttcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32792922|gb|CD945158.1|CD945158EST: GATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCA GAATATTGTATCAACAGTTA
genomic: GATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCAgtaagtcccg ... ttcatgacagGAATATTGTATCAACAGTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCGAGGTTGCGTGCGTGATTGGGATGGCGGAGCCGGGGCTCGAGGACAGCCAGCCGGTGGATCTGTCCAAGCACCCCTCCGGCATCGTCCCCACGCTCCAgtaagtcccggatctgggtcgtctggggttaggggttgcggagagatcccgtgccgtacgtgctagggtcgcgcggcggatggcggtgcttgggttccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA