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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGTTCAACTTCCGCTGGACCCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccactatagcgagcacctcttaccgttccactgtccctttcccctttctccaaaccctaagatcaattttctgtttgttcctgctgggttggatccagcatatgcag

Basic information

species Zea mays
transcript GRMZM2G149105_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149105_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G15610.1 (Glycine max), 5'ss of exon 1
CGAGTTCAACTTCCGCTGGACCCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccactat------------agcgagcacctcttaccgttccactgt------ccctttcccctttctccaaaccctaagatcaattttctgtttgttcctgctgggttggatccagcatatgcag-----------------------------------------
 |||||||| ||||| ||||| ||||||| ||| ||  | || ||| |||||||| ||||| | ||| ||||||||||||||||||||||||| ||||||||||      ||            |   ||  | | | |   | ||  ||         ||||  | |   ||   |   ||   |    |||    ||  |  |      |      |  | | ||| |                                         
GGAGTTCAATTTCCGTTGGACTCGCCGCAACCTTGCTCTTGTTGGCATCTTCGGCATCGCTATTCCCGTCCTCGTCTACAAGGGCATCGTCCGTGAATTCgtaagtagtcattttccaattcccaattagggcttttcattctacctatgcattcgattctttttcttccttctttatgttatacttggattttcactttcttttaacaactatatctctccttctgctgaaacatgttttattttcaaaaacaatcaatttctgattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211295593|gb|FK993204.1|FK993204
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211295593|gb|FK993204.1|FK993204
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211295593|gb|FK993204.1|FK993204
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211353194|gb|FL276147.1|FL276147
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         GACGAGGATGCAGGTCGGCCATACAGGAAGTTCCTGTAAGCGGCGTCCAGG
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcagGACGAGGATGCAGGTCGGCCATACAGGAAGTTCCTGTAAGCGGCGTCCAGG
EST: gi|113704028|gb|EE681532.1|EE681532
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|113704028|gb|EE681532.1|EE681532
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|113704028|gb|EE681532.1|EE681532
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211291313|gb|FK993176.1|FK993176
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211291313|gb|FK993176.1|FK993176
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211291313|gb|FK993176.1|FK993176
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211291313|gb|FK993176.1|FK993176
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211291313|gb|FK993176.1|FK993176
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211291313|gb|FK993176.1|FK993176
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|18181118|gb|BM382328.1|BM382328
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|18181118|gb|BM382328.1|BM382328
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|18181118|gb|BM382328.1|BM382328
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|88758367|gb|DY542736.1|DY542736
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|88758367|gb|DY542736.1|DY542736
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|88758367|gb|DY542736.1|DY542736
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211289164|gb|FK993154.1|FK993154
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211289164|gb|FK993154.1|FK993154
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211289164|gb|FK993154.1|FK993154
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211289164|gb|FK993154.1|FK993154
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211289164|gb|FK993154.1|FK993154
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211289164|gb|FK993154.1|FK993154
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|31558224|gb|CD527436.1|CD527436
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|31558224|gb|CD527436.1|CD527436
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|31558224|gb|CD527436.1|CD527436
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|40336174|gb|CK370244.1|CK370244
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|40336174|gb|CK370244.1|CK370244
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|40336174|gb|CK370244.1|CK370244
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211295590|gb|FK993201.1|FK993201
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211295590|gb|FK993201.1|FK993201
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211295590|gb|FK993201.1|FK993201
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|87156671|gb|DY401460.1|DY401460
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|87156671|gb|DY401460.1|DY401460
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|87156671|gb|DY401460.1|DY401460
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|87156671|gb|DY401460.1|DY401460
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|87156671|gb|DY401460.1|DY401460
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|87156671|gb|DY401460.1|DY401460
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211175450|gb|FK993115.1|FK993115
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211175450|gb|FK993115.1|FK993115
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211175450|gb|FK993115.1|FK993115
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211175450|gb|FK993115.1|FK993115
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211175450|gb|FK993115.1|FK993115
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211175450|gb|FK993115.1|FK993115
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|40334761|gb|CK368831.1|CK368831
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|40334761|gb|CK368831.1|CK368831
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|40334761|gb|CK368831.1|CK368831
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|37389703|gb|CF632072.1|CF632072
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|37389703|gb|CF632072.1|CF632072
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|37389703|gb|CF632072.1|CF632072
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|37390399|gb|CF632429.1|CF632429
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|37390399|gb|CF632429.1|CF632429
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|37390399|gb|CF632429.1|CF632429
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211299863|gb|FK993224.1|FK993224
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211299863|gb|FK993224.1|FK993224
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211299863|gb|FK993224.1|FK993224
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211299863|gb|FK993224.1|FK993224
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211299863|gb|FK993224.1|FK993224
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211299863|gb|FK993224.1|FK993224
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211291306|gb|FK993169.1|FK993169
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211291306|gb|FK993169.1|FK993169
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211291306|gb|FK993169.1|FK993169
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211291306|gb|FK993169.1|FK993169
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211291306|gb|FK993169.1|FK993169
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211291306|gb|FK993169.1|FK993169
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|37379878|gb|CF626706.1|CF626706
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|37379878|gb|CF626706.1|CF626706
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|37379878|gb|CF626706.1|CF626706
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211297727|gb|FK993215.1|FK993215
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211297727|gb|FK993215.1|FK993215
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211297727|gb|FK993215.1|FK993215
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211177124|gb|FK993123.1|FK993123
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211177124|gb|FK993123.1|FK993123
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211177124|gb|FK993123.1|FK993123
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211177124|gb|FK993123.1|FK993123
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211177124|gb|FK993123.1|FK993123
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|211177124|gb|FK993123.1|FK993123
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         C
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcag-
EST: gi|37385459|gb|CF629872.1|CF629872
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|37385459|gb|CF629872.1|CF629872
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|37385459|gb|CF629872.1|CF629872
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211299867|gb|FK993228.1|FK993228
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211299867|gb|FK993228.1|FK993228
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211299867|gb|FK993228.1|FK993228
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|211353195|gb|FL276148.1|FL276148
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTC                         GACGAGGATGCAGGTCGGCCATACAGGAAGTTCCTGTAAGAGGCGTCCAGG
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcagGACGAGGATGCAGGTCGGCCATACAGGAAGTTCCTGTAAGCGGCGTCCAGG
EST: gi|113704091|gb|EE681595.1|EE681595
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|113704091|gb|EE681595.1|EE681595
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|113704091|gb|EE681595.1|EE681595
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|23199646|gb|BU582211.1|BU582211
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|23199646|gb|BU582211.1|BU582211
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat
EST: gi|23199646|gb|BU582211.1|BU582211
EST:     TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCCATATGC                   
genomic: TCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCG-A----AT-T-Cgtaatccact ... gcat

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 31 (downstream exon)
Score: 7

CGAGTTCAACTTCCGCTGGACCCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcagGACGAGGATGCAGGTCGGCCATACAGGAAGTTCCTGTAAGCGGCGTCCAGGGCTGCAGGATACGTCGATTCCTCGACCGGGGCTGCGAGGAGGGGAGTTT


Block sizes: 49 (upstream exon), 34 (downstream exon)
Score: 9

CGAGTTCAACTTCCGCTGGACCCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcagGACGAGGATGCAGGTCGGCCATACAGGAAGTTCCTGTAAGCGGCGTCCAGGGCTGCAGGATACGTCGATTCCTCGACCGGGGCTGCGAGGAGGGGAGTTT


Block sizes: 49 (upstream exon), 29 (downstream exon)
Score: 9

CGAGTTCAACTTCCGCTGGACCCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcagGACGAGGATGCAGGTCGGCCATACAGGAAGTTCCTGTAAGCGGCGTCCAGGGCTGCAGGATACGTCGATTCCTCGACCGGGGCTGCGAGGAGGGGAGTTT


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 10

CGAGTTCAACTTCCGCTGGACCCGCCGCAGCCTCGCCGTCGTCGGCCTCTTCGGCCTCGCTGTCCCCATCCTCGTCTACAAGGGCATCGTCCGCGAATTCgtaatccact ... gcatatgcagGACGAGGATGCAGGTCGGCCATACAGGAAGTTCCTGTAAGCGGCGTCCAGGGCTGCAGGATACGTCGATTCCTCGACCGGGGCTGCGAGGAGGGGAGTTT