Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACCTTTCCTCTCTTCTCCCGTCCGGCCGTCCCCTCTTCCGCGGCAACCCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaaccctaaaccatccagccgcgtgcgaggtcgccgctcgatttgactgatctccatgcttccccttttgtgggttccccctttctctgtgcgcatggttgcgcgcgttcag

Basic information

species Zea mays
transcript GRMZM2G148130_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88757762|gb|DY541903.1|DY541903
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|89248069|gb|DY619855.1|DY619855
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|93282265|gb|EB674529.1|EB674529
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|76289947|gb|DV029515.1|DV029515
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|211173761|gb|FK993090.1|FK993090
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCCTCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|78092977|gb|DV521351.1|DV521351
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGGTTGCGCGCGTTCAG           
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGT--C---------C-CG-G--AAGgtaataaacc
EST: gi|78115400|gb|DV533788.1|DV533788
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|94476524|gb|EB705482.1|EB705482
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|86475097|gb|DY241467.1|DY241467
EST:     CCCGGGGCGGGATGGGGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCGGGCGCCTGCAAAAGGAGCTAACGGAGGGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: gi|76012087|gb|DT939257.1|DT939257
EST:     CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG                         GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATACCTTTCCTCTCTTCTCCCGTCCGGCCGTCCCCTCTTCCGCGGCAACCCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaaccctaaaccatccagccgcgtgcgaggtcgccgctcgatttgactgatctccatgcttccccttttgtgggttccccctttctctgtgcgcatggttgcgcgcgttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - CGGCGCGG