1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATACCTTTCCTCTCTTCTCCCGTCCGGCCGTCCCCTCTTCCGCGGCAACCCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaaccctaaaccatccagccgcgtgcgaggtcgccgctcgatttgactgatctccatgcttccccttttgtgggttccccctttctctgtgcgcatggttgcgcgcgttcag
species | Zea mays |
transcript | GRMZM2G148130_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCCTCTTTCCCGTCCCGGAAG GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGGEST: gi|76292123|gb|DV031691.1|DV031691
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAG GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGGEST: gi|84980323|gb|DW530672.1|DW530672
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
EST: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCCTCTTTCCCGTCCCGGAAG GCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
genomic: CCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaacc ... gcgcgttcagGCCCTGAGCAAGATCGCCTGCAGGCGCCTGCAGAAGGAGCTAACGGAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATACCTTTCCTCTCTTCTCCCGTCCGGCCGTCCCCTCTTCCGCGGCAACCCCGGCGCGGCATGGCGAGCCCGTCCTCCTCATCTTTCCCGTCCCGGAAGgtaataaaccctaaaccatccagccgcgtgcgaggtcgccgctcgatttgactgatctccatgcttccccttttgtgggttccccctttctctgtgcgcatggttgcgcgcgttcag
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