Sequence
atgc intronic sequence ATGC exonic sequenceGGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtcccctctccctcctcgaatctccacaggtcacccgcagatccgcggttctgttccgcgggggttcccgattctgat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G147726_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g15040.2 (Oryza sativa), 5'ss of exon 1
GGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtcccctctccctcctcgaatctccacaggtcacccgcagatccgcggttctgttccgcgggggttcccgattctgat--
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GGCATCGTCTTCACGCGGCTCTTCTCGTCGGTCTTCGGCAACCGCGAGGCCCGCATCCTCGTCCTCGGCCTCGACAATGCCGGCAAGACCACCATCCTATgtaag-----cccacctcgccccccgactccatcgaatgtaatctcgccgtctccacctcggatctga---tctgggtgcttgtgtttttttttcctcgcag
upper sequence: GRMZM2G147726_T03 (Zea mays), 5'ss of exon 1
lower sequence: AT2G24765.1 (Arabidopsis thaliana), 5'ss of exon 1
GGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtcccctctccctcc---tcgaatctccacaggtcac--ccgcagatccg--cggttct---gttccgcgggggttcccgattct----gat-----
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GGAATCTTATTCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCTCGAATCCTCGTCCTCGGTCTCGACAATGCTGGAAAAACCACAATCCTCTgtaaatt-cactgcctcaatctttcgcattgtgtaatagatttgatatttagtagctagggtttttgattcgatcgttttttgagttgcgttgatgtttttgattctctgtgattccag
upper sequence: GRMZM2G147726_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv04s0008g07360.t01 (Vitis vinifera), 5'ss of exon 1
GGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtcccctctccctcctcgaatctccacaggt---cacccgcagatccgcggttctgttccgcgggggttcccgattctgat
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GGTATCCTGTTCACTCGAATGTTTTCTTCAGTCTTCGGCAACAGAGAAGCTCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCTgta--ttctctctttccattt--ttctctatatattccc-aatttctacgatttttcaccctaccatttctgtatatatttcgtgtag---------------
upper sequence: GRMZM2G147726_T03 (Zea mays), 5'ss of exon 1
lower sequence: EFJ14920 (Selaginella moellendorffii), 5'ss of exon 1
GGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtccc--ctctccctcctcgaatctccacaggtcacccgcagatccgcggttctgttccgcgggggttcccgattctgat
|| || | || | || |||| | || | ||||| | | || || || ||||||||||| ||||||||||| || ||||||||||| || ||||||| || | || | | | || | | ||| ||| | || | | | ||| || || | | || |||
GGTATGTTCTTCTCTCGATTCTTTACTTCCTTGTTCGGCGATAGGGAAGCCCGGATCCTCGTCCTGGGCCTGGACAACGCCGGCAAGACCACGATTCTCTgtatcctttgatcgatccgtcagatctagcgcttctaggttgaaattccgc-ggcgatctcc--gcccgggggtccttaactcgacatttcag---------
upper sequence: GRMZM2G147726_T03 (Zea mays), 5'ss of exon 1
lower sequence: EFJ37645 (Selaginella moellendorffii), 5'ss of exon 1
GGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtccc--ctctccctcctcgaatctccacaggtcacccgcagatccgcggttctgttccgcgggggttcccgattctgat
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GGTATGTTCTTCTCTCGATTCTTTACTTCCTTGTTCGGCGATAGGGAAGCTCGGATCCTCGTCTTGGGCCTGGACAACGCCGGCAAGACCACGATTCTCTgtatcctttgatcgatccgtcagatctagcgcttctaggttgaaattccgc-ggcgatctcc--gcccgggggtccttaactcgacatttcag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211217104|gb|FL383487.1|FL383487EST: TCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCT GTGGTCAAACAAGCATCAG
genomic: TCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgca ... ttctcgacagGTGGTCAAACAAGCATCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtcccctctccctcctcgaatctccacaggtcacccgcagatccgcggttctgttccgcgggggttcccgattctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA