Sequence
atgc intronic sequence ATGC exonic sequenceGGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtcccctctccctcctcgaatctccacaggtcacccgcagatccgcggttctgttccgcgggggttcccgattctgatccttccgggttgtttcggttcgtttcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G147726_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g15040.2 (Oryza sativa), 5'ss of exon 1
GGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtcccctctccctcctcgaatctccacaggtcacccgcagatccgcggttctgttccgcgggggttcccgattctgatccttccgggttgtttcggttcgtttcacag
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GGCATCGTCTTCACGCGGCTCTTCTCGTCGGTCTTCGGCAACCGCGAGGCCCGCATCCTCGTCCTCGGCCTCGACAATGCCGGCAAGACCACCATCCTATgtaag---------cccacctcgccccccgactc-catcgaatgtaatctcgccgtctcca---cctcggatctgatctg--ggtgcttgtgtttttttttcctcgcag---------------------
upper sequence: GRMZM2G147726_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT2G24765.1 (Arabidopsis thaliana), 5'ss of exon 1
GGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtcccctctccctcctcgaatctccacaggtcacccgcagatccgcggttctgttccgcgggggttcccgattctgatccttccgggttgtttcggttcgtttcacag
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GGAATCTTATTCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCTCGAATCCTCGTCCTCGGTCTCGACAATGCTGGAAAAACCACAATCCTCTgtaaatt-cactgcctcaatctttcgcat-tgtgtaatagatttgatatttagtagcta-gggtttttgattcgatcgttttttgagttgcg---ttgatgtttttgattctctgtgattccag------
upper sequence: GRMZM2G147726_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv04s0008g07360.t01 (Vitis vinifera), 5'ss of exon 1
GGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtcccctctccctcctcgaatctccacaggt---cacccgcagatccgcggttctgttccgcgggggttcccgattctgatccttccgggttgtttcggttcgtttcacag
|| ||| |||| || || | || || || |||||||| ||| | || ||||| || ||||| |||||||| ||||||||||| || ||||| || ||||||| | | || || | | || | | | | ||| || || | ||||| || | | | || || | |
GGTATCCTGTTCACTCGAATGTTTTCTTCAGTCTTCGGCAACAGAGAAGCTCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCTgta--ttctctctttccattt--ttctctatatattccc-aatttctacgatttttcaccctaccatttctgtatatatttcgtgtag---------------------------------------------
upper sequence: GRMZM2G147726_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ14920 (Selaginella moellendorffii), 5'ss of exon 1
GGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtcccctctccctcctcgaatctccacaggtcacccgcagatccgcggttctgttccgcgggggttcccgattctgatccttccgggttgtttcggttcgtttcacag
|| || | || | || |||| | || | ||||| | | || || || ||||||||||| ||||||||||| || ||||||||||| || ||||||| | | || |||||| ||| | | || |||| | | ||||||| | | | | |||| ||| | || ||| |
GGTATGTTCTTCTCTCGATTCTTTACTTCCTTGTTCGGCGATAGGGAAGCCCGGATCCTCGTCCTGGGCCTGGACAACGCCGGCAAGACCACGATTCTCTgta----tcctttgatcgatccgtcagatctagcgcttc---------taggtt----gaaattccgcggcgatctccgcccgggggtccttaactcgacatttcag-----------------------
upper sequence: GRMZM2G147726_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ37645 (Selaginella moellendorffii), 5'ss of exon 1
GGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtcccctctccctcctcgaatctccacaggtcacccgcagatccgcggttctgttccgcgggggttcccgattctgatccttccgggttgtttcggttcgtttcacag
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GGTATGTTCTTCTCTCGATTCTTTACTTCCTTGTTCGGCGATAGGGAAGCTCGGATCCTCGTCTTGGGCCTGGACAACGCCGGCAAGACCACGATTCTCTgta----tcctttgatcgatccgtcagatctagcgcttc---------taggtt----gaaattccgcggcgatctccgcccgggggtccttaactcgacatttcag-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32827477|gb|CD967155.1|CD967155EST: TCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCT ATAGACTGCAAATGGGAGAGGTCGTCTCCACGATCCCGA
genomic: TCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgca ... cgtttcacagATAGACTGCAAATGGGAGAGGTCGTCTCCACGATCCCGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCATCGTGTTTACGCGGCTCTTCTCGTCGGTCTTCGGTAACCGCGAGGCTCGCATCCTCGTCCTCGGCCTGGACAATGCTGGCAAGACCACCATACTCTgtaagtcgcacccgcccgttccgtcccctctccctcctcgaatctccacaggtcacccgcagatccgcggttctgttccgcgggggttcccgattctgatccttccgggttgtttcggttcgtttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA