1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGCGGCCGCCATCTTCGTCGTCCTCATGCTCGTCACGCCCGCCATCCCGCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgccctctaccctccaccatccttccccacccacgcgcgcagcacgcctcgattcgaccgccttcggcgcctcaatcgctgctccccatatcct...
species | Zea mays |
transcript | GRMZM2G147709_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAG GGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTGEST: gi|211225144|gb|FL356495.1|FL356495
genomic: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgcc ... attactgcagGGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
EST: GCA-GACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAG GGATTCCCAACACCTTGAATGTGATCTCAGACATCCCTTTCTTCTTTGTTGEST: gi|211166572|gb|FK969120.1|FK969120
genomic: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgcc ... attactgcagGGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
EST: GCA-GACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAG GGATTCCCAACACCTTGAATGTGATCTCAGACATCCCTTTCTTCTTTGTTGEST: gi|211218284|gb|FL207814.1|FL207814
genomic: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgcc ... attactgcagGGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
EST: GCA-GACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAG GGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTGEST: gi|211515170|gb|FL354450.1|FL354450
genomic: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgcc ... attactgcagGGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
EST: GCAG-ACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAG GGATTCCCAACACCTTGAATGTGATCTCAGACATCCCTTTCTTCTTTGTTGEST: gi|211166571|gb|FK969119.1|FK969119
genomic: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgcc ... attactgcagGGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
EST: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAG GGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTGEST: gi|6695713|gb|AW288791.1|AW288791
genomic: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgcc ... attactgcagGGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
EST: CGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAG GGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTGEST: gi|78180569|gb|DV550897.1|DV550897
genomic: CGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgcc ... attactgcagGGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
EST: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAG GGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTGEST: gi|211049503|gb|FL332054.1|FL332054
genomic: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgcc ... attactgcagGGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
EST: GCA-GACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAG GGATTCCCAACACCTTGAATGTGATCTCAGACATCCCTTTCTTCTTTGTTGEST: gi|12046333|gb|BF728472.1|BF728472
genomic: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgcc ... attactgcagGGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
EST: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAG GGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTGEST: gi|12045665|gb|BF727804.1|BF727804
genomic: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgcc ... attactgcagGGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
EST: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAG GGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTGEST: gi|78180036|gb|DV550409.1|DV550409
genomic: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgcc ... attactgcagGGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
EST: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAG GGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
genomic: GCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgcc ... attactgcagGGATTCCCAACACCTTGAATGTGATCTCAAACATCCCTTTCTTCTTTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCGGCCGCCATCTTCGTCGTCCTCATGCTCGTCACGCCCGCCATCCCGCAGGACGAAGCCTACCACGACTTCGCGGACCAGCGCACCCTTTTCTTAGgtagcgcgccctctaccctccaccatccttccccacccacgcgcgcagcacgcctcgattcgaccgccttcggcgcctcaatcgctgctccccatatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc