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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGTTCTCTGCCCTCGGGTACCTCGTCTGTTCAGTCTTCAGAGCTGGGTTCGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCCTTAAGTTTTGgtacgctctagcctgcttctcttagattatattcagattatgaaagagtgaagaactccttcagcttgcctttgttgtaaggttcattcatccgtcgcctcaaaattctaatttcaccccgaatctttatttttttcag

Basic information

species Zea mays
transcript GRMZM2G147619_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71768980|gb|DR966917.1|DR966917
EST:     TCGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCCTTAAGTTTTG                         GCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAA
genomic: TCGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCCTTAAGTTTTGgtacgctcta ... tttttttcagGCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAA
EST: gi|91048161|gb|EB158579.1|EB158579
EST:     TCGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCCTTAAGTTTTG                         GCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAA
genomic: TCGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCCTTAAGTTTTGgtacgctcta ... tttttttcagGCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAA
EST: gi|86466024|gb|DY232397.1|DY232397
EST:     TCGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCCTTAAATTTTG                         GCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGAAAAATCAAAAATGCTGA
genomic: TCGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCCTTAAGTTTTGgtacgctcta ... tttttttcagGCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAA
EST: gi|91876633|gb|EB406590.1|EB406590
EST:     CGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCCCTTAAGTTTTG                         GCCGTCTTGTTACTGTCTGCTGTTCCACAGACGACGAATCACGAATGCTAA
genomic: CGGTCTATTCCTCATCCTCTCTTGTTGATCCGGAGTGCC-TTAAGTTTTGgtacgctcta ... tttttttcagGCCGTCTTGTTACTGTCTGCTGTTCCACAGTCGACGAATCACGAATGCTAA