Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTCCTGCCTGGTCATGGAGTTCTGCCCCGGAGGAGACCTCCACGCTCTTCGGCAGAGGCAGCCTGGCAAACATTTCCCGGAGCAAGCTGTCAAGTACgtatgtcttatccacattttaccatccgcatgtattgcatttcactgtctaaatagtacttaacagagttaaggcttttgagttcattagtttgaaatcatcgtgactgaaaaacaaatcctattgcttgctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G147112_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g49310.1 (Oryza sativa), 5'ss of exon 2
----GTTCTCCTGCCTGGTCATGGAGTTCTGCCCCGGAGGAGACCTCCACGCTCTTCGGCAGAGGCAGCCTGGCAAACATTTCCCGGAGCAAGCTGTCAAGTACgtatgtcttatc--cacattttaccatccgcatgtattgcatttcactgtctaaatagtacttaacagagttaaggcttttgagttcattagtttgaaatcatcgtgactgaaaaacaaatcctattgcttgctgcag
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ACAAGTTCTCATGCCTGGTGATGGAGTTCTGCCCAGGAGGAGACCTGCATACCCTTAGGCAGAGGCAGCCGGGCAAATATTTTCCAGAGCAAGCTGTCAAgtatgtct-tttcaccatttctttcaaaaatctgtttatctc-cattttaccttctgcat-gtacttcaccacctaacagaaatggtg---attttcttaaaattt------------------------------------
upper sequence: GRMZM2G147112_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv10s0116g00440.t01 (Vitis vinifera), 5'ss of exon 1
----GTTCTCCTGCCTGGTCATGGAGTTCTGCCCCGGAGGAGACCTCCACGCTCTTCGGCAGAGGCAGCCTGGCAAACATTTCCCGGAGCAAGCTGTCAAGTACgtatgtcttatccacattttaccatccgcatgtattgcatttcactgtctaaatagtacttaacagagttaaggcttttgagttcattagtttgaaatcatcgtgactgaaaaacaaatcctattgcttgctgcag
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AGAAGTTCTCATGTTTGGTAATGGAGTTCTGCCCGGGAGGAGATTTGCACACTCTTAGACAGAGGCAGCCAGGGAAACATTTTACTGAGCAAGCAGTGAAgtatgc------tatcatcttttaaacccatagtttcatttgaagcaacctttaacatagaatttgattctctttagttgttctgcatatcctggttaatcttata----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13490665|gb|BG517429.1|BG517429EST: TTCGGCAGAGGCAGCCTGGCAAACATTTCCCGGAGCAAGCTGCCAA--A- AT-CTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGC
genomic: TTCGGCAGAGGCAGCCTGGCAAACATTTCCCGGAGCAAGCTGTCAAGTACgtatgtctta ... cttgctgcagATTCTACATAGCAGAAGTCCTCCTGGCGCTAGAATACCTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCTCCTGCCTGGTCATGGAGTTCTGCCCCGGAGGAGACCTCCACGCTCTTCGGCAGAGGCAGCCTGGCAAACATTTCCCGGAGCAAGCTGTCAAGTACgtatgtcttatccacattttaccatccgcatgtattgcatttcactgtctaaatagtacttaacagagttaaggcttttgagttcattagtttgaaatcatcgtgactgaaaaacaaatcctattgcttgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG