1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGCCGAGCGGGAGTTCAGGGTGGAGGTGGAGGCCATCGGCCGCGTCCGGCACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagtgcattattattgcttcttgctttgtggtaaatttttgttcgtgcgctgcgcatcgtacctctacggctctacctaacctaaatgcggttgcttgtgatcccag
species | Zea mays |
transcript | GRMZM2G147051_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACG GATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCAEST: gi|30306478|gb|CD001151.1|CD001151
genomic: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagt ... gtgatcccagGATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCA
EST: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACG GATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCAEST: gi|28987604|gb|CB351717.1|CB351717
genomic: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagt ... gtgatcccagGATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCA
EST: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACG GATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCAEST: gi|28909856|gb|CB331133.1|CB331133
genomic: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagt ... gtgatcccagGATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCA
EST: CACAAGAATCTGGTCCGG-TACTGGGCTACTGCGCCGAGGGCGCCCAACG GATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCAEST: gi|31909295|gb|CD650847.1|CD650847
genomic: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagt ... gtgatcccagGATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCA
EST: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACG GATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCAEST: gi|29167724|gb|CB410984.1|CB410984
genomic: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagt ... gtgatcccagGATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCA
EST: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACG GATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCAEST: gi|31909042|gb|CD650722.1|CD650722
genomic: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagt ... gtgatcccagGATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCA
EST: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACG GATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCAEST: gi|29129799|gb|CB380503.1|CB380503
genomic: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagt ... gtgatcccagGATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCA
EST: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACG GATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCAEST: gi|71439998|gb|DR821048.1|DR821048
genomic: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagt ... gtgatcccagGATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCA
EST: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACG GATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCAEST: gi|31909331|gb|CD650865.1|CD650865
genomic: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagt ... gtgatcccagGATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCA
EST: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACG GATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCAEST: gi|29947207|gb|CB816535.1|CB816535
genomic: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagt ... gtgatcccagGATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCA
EST: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACG GATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCA
genomic: CACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagt ... gtgatcccagGATACTTGTGTACGAGTACGTGGACAACGGCAACCTCGAGCAGTGGCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCCGAGCGGGAGTTCAGGGTGGAGGTGGAGGCCATCGGCCGCGTCCGGCACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagtgcattattattgcttcttgctttgtggtaaatttttgttcgtgcgctgcgcatcgtacctctacggctctacctaacctaaatgcggttgcttgtgatcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CTGCGCCG