Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAATCTCTTGCGTTTGTATGGATTTTGCATGACCTCTAAAGAACGGTTGCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGACCGTTTGAGAGgtaactcaattgtctacaacattttaatgttagttaagtttacaattggcattccgcgcaagtctttttcattccttgtaaatatattgtttaagactatgtgttttggttggttctttgccacgtcatattatctgcttatatccttataccttagtaatatatggggttgcaattttcag

Basic information

species Zea mays
transcript GRMZM2G146794_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146794_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g14120.1 (Oryza sativa), 5'ss of exon 9
AGGAATCTCTTGCGTTTGTATGGATTTTGCATGACCTCTAAAGAACGGTTGCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGACCGTTTGAGAGgtaact-caattgtctacaac--attttaatgttagttaagtttacaattggcattccgcgcaagtctttttcattccttgtaaatatattgtttaagactatgtgttttggttggttctttgccacgtcatattatctgcttatatccttataccttagtaatatatggggttgcaattttcag
||||| || ||||| || |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |||| ||| | |||  ||||| || |||  |     || |  |||         ||  | |  |||  |  ||| |  || | ||||   ||                                                                                      
AGGAACCTTTTGCGGTTATATGGATTCTGCATGACCTCAAAAGAAAGGTTGCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGATCGCTTGAGAGgtaattacaatcgtccaaaacaaattttgattttatgttttaatatagctgggccagtttccagttgtagttc--ttattgaaggtagactgttgttgatcc-----------------------------------------------------------------------------------

upper sequence: GRMZM2G146794_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA13G30050.1 (Glycine max), 5'ss of exon 9
AGGAATCTCTTGCGTTTGTATGGATTTTGCATGACCTCTAAAGAACGGTTGCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGACCGTTTGAGAGgtaactcaattgtctacaacattttaatgttag-ttaagtttacaattggcattccgcgcaagtctttttcattccttgtaaatatattgtttaagactatgtgttttggttggttctttgccacgtcatattatctgcttatatccttataccttagtaatatatggggttgcaattttcag
 |||| ||||||||| | |||||||| || |||||  |  | ||| |||| ||||| ||||| || ||||| || |||||||||||||| || |||||||||   |    | | |   |  | || || | ||  |  ||  |  ||||  | |  | | |  |   |  |  |    ||  | ||       || |  |                                                                                   
CGGAACCTCTTGCGTCTTTATGGATTCTGTATGACACCAGATGAAAGGTTACTTGTTTATCCTTACATGCCCAACGGCAGTGTTGCTGATCGCTTGAGAGgtttgtttcatatttttcatttcttcatttgaggctgtgtaaaatattgtaactaagagtagatacatgcctcttacagtggaaattagaaaaaaaaaaa-----------------------------------------------------------------------------------

upper sequence: GRMZM2G146794_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA15G09100.1 (Glycine max), 5'ss of exon 10
AGGAATCTCTTGCGTTTGTATGGATTTTGCATGACCTCTAAAGAACGGTTGCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGACCGTTTGAGAGgtaactcaattgtctacaacattttaatgttagttaagtttacaattggcattccgcgcaagtctttttcattccttgtaaatatattgtttaagactatgtgttttggttggttctttgccacgtcatattatctgcttatatccttataccttagtaatatatggggttgcaattttcag
 |||| ||||||||| | |||||||||||||||||  |  | ||| |||||||||| ||||| || ||||| ||||||||||||||||| |  |||||||||       ||||          || || ||| | |  |||  | |||    |  | | ||    || | | |    ||| ||| || |     |   |   | | |  |    ||  || || ||                                                        
CGGAACCTCTTGCGTCTTTATGGATTTTGCATGACACCAGATGAAAGGTTGCTTGTTTATCCTTACATGCCCAATGGCAGTGTTGCTGATCACTTGAGAGgt-------ttgt----------ttcatattattcatttttgtatttgaggct--gtgtaaaatattgtaactg--agtagatacatggaaattggaaaaaagctgtcttcaaatcaatgacatgtag------------------------------------------------------

upper sequence: GRMZM2G146794_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv10s0003g01490.t01 (Vitis vinifera), 5'ss of exon 9
AGGAATCTCTTGCGTTTGTATGGATTTTGCATGACCTCTAAAGAACGGTTGCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGACCGTTTGAGAGgtaactcaattgtctacaacattttaatgttagttaagtttacaattggcattccgcgcaagtctttttcattccttgtaaatatattgtttaagactatgtgttttggttggttctttgccacgtcatattatctgcttatatccttataccttagtaatatatggggttgcaattttcag
 | || ||||| ||||||||||| || || ||||| ||  | ||| |||||||||| ||||| |||||||||||||| ||||||||||| || |||||||||       |||| | ||   ||||  || |   |  |  |       |  |||   |  | ||| | ||  ||    | ||| |   |    ||  | | ||| |     ||||                                                                   
CGAAACCTCTTACGTTTGTATGGTTTCTGTATGACATCGGATGAAAGGTTGCTTGTTTATCCTTATATGCCAAATGGGAGTGTTGCTGATCGCTTGAGAGgt-------ttgtttcca---ttttggtgctgtgtctgcct-------gtgttctttgttactctctctctctctgaatgaatttgaggaagtaggatctatgtatcctgaggttta-----------------------------------------------------------------

upper sequence: GRMZM2G146794_T02 (Zea mays), 5'ss of exon 9
lower sequence: PP1S490_4V6.1 (Physcomitrella patens), 5'ss of exon 10
AGGAATCTCTTGCGTTTGTATGGATTTTGCATGACCTCTAAAGAACGGTTGCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGACCGTTTGAGAGgtaactcaattgtctacaacattttaatgttagttaagtttacaattggcattccgcgcaagtctttttcattccttgtaaatatattgtttaagactatgtgttttggttggttctttgccacgtcatattatctgcttatatccttataccttagtaatatatggggttgcaattttcag
|| |||||  ||||  ||   || |||||||||||| |||  |||||  ||||||| ||||| |||||||| ||||||||||| ||    ||| |  |||||   |  ||  ||||   |  |   ||  |  | | |  | | | |   ||| |   ||     |||||||||  | |   |  |    | ||  | ||  |   |                                                                           
AGAAATCTTCTGCGCCTGCGAGGCTTTTGCATGACCCCTACTGAACGTCTGCTTGTTTATCCGTATATGCCCAATGGCAGTGTGGCATCTCGTCTTCGAGgtggattcatcttctatttc--tcccattcttttgaggccttctagt--tattactgcca---tcttttcattcactatcttttaacgcatgaaagccattggagat---------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91875937|gb|EB405894.1|EB405894
EST:     GCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGACCGTTTGAGAG                         ATTATCGCAATGGAAAACCATCTCTTGATTGGAGTAAACGCATGCGGATTG
genomic: GCTTGTATATCCATATATGCCAAATGGCAGTGTTGCTGACCGTTTGAGAGgtaactcaat ... caattttcagATTATCGCAATGGAAAACCATCTCTTGATTGGAGTAAACGCATGCGGATTG