1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCCCAAGGAGGCTGTGAGGAAGAAGGCCGTCATGGCACTACACCGGTTCTACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcacttttctcctccatattttggttctagataaattcatgtttttataacctacggccatttctgttctagatgaatggtagtatgcatttagaa...
species | Zea mays |
transcript | GRMZM2G146697_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAG AGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCCCCTCEST: gi|74232177|gb|DT640091.1|DT640091
genomic: ACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcactt ... ttctgtgcagAGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCCCCTC
EST: ACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAG AGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCCEST: gi|149107427|gb|EE189306.2|EE189306
genomic: ACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcactt ... ttctgtgcagAGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCC
EST: ACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAG AGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCCACTCTTTGCCCCCTC
genomic: ACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcactt ... ttctgtgcagAGGCTCTGTGATAATGATCCAGGGGTGATGGGTGCAACTCTTTGCCCCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCAAGGAGGCTGTGAGGAAGAAGGCCGTCATGGCACTACACCGGTTCTACCAGCGATCCCCCTCCTCCGTCTCCCACCTCGTCTCCAACTTCCGCAAGgtccgcacttttctcctccatattttggttctagataaattcatgtttttataacctacggccatttctgttctagatgaatggtagtatgcatttagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC