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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTCGGCCACGTCGAGCCGGCGCCCAAGGACCCCATCCTCGGCGTCACCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactttgcctgctccgtgaacctctgatcttctttcttttctccccccgcgcgatcgcgaccatgcgaatcttgctttctagcttgtcctcagtccccgaatcctgatgaaatggaacgggacgggtgcttttgttgcag

Basic information

species Zea mays
transcript GRMZM2G146677_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146677_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g14110.1 (Oryza sativa), 5'ss of exon 1
GCTCTTCGGCCACGTCGAGCCGGCGCCCAAGGACCCCATCCTCGGCGTCACCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactttgcctgctccgtgaacctctgatcttctttcttttctccccccgcgcgatcgcgaccatgcgaatcttgctttctagcttgtcctcagtccccgaatcctgatgaaatggaacgggacgggtgcttttgttgcag
||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||| |||||||||||||| |||   |  |   |||  |    ||||     ||| ||| |    | | | | |  || |   |||  | |||   |  ||| |||||              || |||| | |   |   ||   || ||||     |||||
GCTGTTCGGCCACGTCGAGCCGGCTTCCAAGGACCCCATCCTCGGCGTCACCGAGGCCTTCCTCGCCGACCCCTCCCCCGACAAAGTCAACGTCGGCGTCgtacgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcattgggatccc-cgatctcgcttg--------------attctgacggagatgttgggcggggatgctgaaactgcag

upper sequence: GRMZM2G146677_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G42830.1 (Glycine max), 5'ss of exon 1
GCTCTTCGGCCACGTCGAGCCGGCGCCCAAGGACCCCATCCTCGGCGTCACCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactttgcctg---ctccgtgaacctctgatcttctttc-ttttctccccccgcgcgatcgcgaccatgcgaatcttgctttctagcttgtcctcagtccccgaatcctgatgaaatggaacgggacgggtgcttttgttgcag
    ||| |   | ||||||| || |||||||| || |||||||| ||||| || |||||||||||||| |      |  ||||||| |||||||| || ||| ||   |  | |    ||||||   | |   || |||   | |||| |    | | |   | |   |      ||   || ||   ||  |    | |                                                
ATGGTTCCGGAGCATCGAGCCCGCTCCCAAGGATCCTATCCTCGGAGTCACTGAAGCTTTCCTCGCCGATCAGAGTCCAAACAAAGTCAACGTCGGAGTGgtgagtttctcacttctctctccgtttccgttgaattttcgcgcatttttttgttctgagaatttgaagcggaattaaatctg-ttaagagagtaaaatta------------------------------------------------

upper sequence: GRMZM2G146677_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S223_31V6.1 (Physcomitrella patens), 5'ss of exon 1
GCTCTTCGGCCACGTCGAGCCGGCGCCCAAGGACCCCATCCTCGGCGTCACCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactttgcctgctccgtgaacctctgatcttctttcttt-tctccccccgcgcgatcgcgaccatgcgaatcttgctttctagcttgtcctcagtccccgaatcctgatgaaatggaacgggacgggtgcttttgttgcag
|   ||||| || ||  |||| |||||||||||||| ||||| |||||||| ||||| || ||||| ||  |     | || ||  ||||||||||||| ||  || |||| |    |   ||      || | |   | || | | |      | | |   | |   ||| |    ||| ||  | | ||||  |   |       | ||                                   
GTGGTTCGGGCATGTGCAGCCCGCGCCCAAGGACCCTATCCTGGGCGTCACGGAGGCGTTTCTCGCTGATTCTCACCCGGATAAGATGAACGTCGGCGTTgtatgtgcttttctcagtttttg------tggtttcactgctgtgtgtgtgtgtgtgtgtgtgtgtttatgtg---tttgtttgtttgtttgt--ttgtttttttggtgct-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71305863|gb|DR789057.1|DR789057
EST:     CCGAGGCTTTCCTCGCCGACCCCTTGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|67018941|gb|CO447690.1|CO447690
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|50328434|gb|CO523560.1|CO523560
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|31353240|gb|CD437597.1|CD437597
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|67017765|gb|CO446514.1|CO446514
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|211379177|gb|FL376874.1|FL376874
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|211278553|gb|FL373301.1|FL373301
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|31351617|gb|CD435974.1|CD435974
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|211010979|gb|FL371766.1|FL371766
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGAC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGAC
EST: gi|211413669|gb|FL415008.1|FL415008
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|211284792|gb|FL428462.1|FL428462
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|148933542|gb|EC877395.2|EC877395
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|149010059|gb|EE041864.2|EE041864
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|148957409|gb|EC903466.2|EC903466
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|67016435|gb|CO445184.1|CO445184
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|149105256|gb|EE290747.2|EE290747
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|31349528|gb|CD433885.1|CD433885
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|67016081|gb|CO444830.1|CO444830
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|31356230|gb|CD440587.1|CD440587
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|67028302|gb|CO457051.1|CO457051
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|31361600|gb|CD445957.1|CD445957
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|50323492|gb|CO518618.1|CO518618
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|149080001|gb|EE169021.2|EE169021
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|31355562|gb|CD439919.1|CD439919
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|148932842|gb|EE285571.2|EE285571
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|50324322|gb|CO519448.1|CO519448
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|78110052|gb|DV528467.1|DV528467
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|71444529|gb|DR825579.1|DR825579
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|67010595|gb|CO439344.1|CO439344
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|149012758|gb|EE042647.2|EE042647
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|31349323|gb|CD433680.1|CD433680
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|31360383|gb|CD444740.1|CD444740
EST:     CCGAGGGTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|31353745|gb|CD438102.1|CD438102
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|211388047|gb|FL420206.1|FL420206
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|31356425|gb|CD440782.1|CD440782
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCATCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|149113112|gb|EE295876.2|EE295876
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|31354884|gb|CD439241.1|CD439241
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|148962545|gb|EE013420.2|EE013420
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|211366473|gb|FL409364.1|FL409364
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|149095396|gb|EE181036.2|EE181036
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
EST: gi|211292939|gb|FL425353.1|FL425353
EST:     CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTC                         GGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC
genomic: CCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 58

GCTCTTCGGCCACGTCGAGCCGGCGCCCAAGGACCCCATCCTCGGCGTCACCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGCGAGGCCGAGCGCCGGATCGCGGGCAACCTCAACAT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 207

GCTCTTCGGCCACGTCGAGCCGGCGCCCAAGGACCCCATCCTCGGCGTCACCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGCGAGGCCGAGCGCCGGATCGCGGGCAACCTCAACAT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 157

GCTCTTCGGCCACGTCGAGCCGGCGCCCAAGGACCCCATCCTCGGCGTCACCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGCGAGGCCGAGCGCCGGATCGCGGGCAACCTCAACAT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 110

GCTCTTCGGCCACGTCGAGCCGGCGCCCAAGGACCCCATCCTCGGCGTCACCGAGGCTTTCCTCGCCGACCCCTCGTCCGACAAAGTGAACGTCGGCGTCgtgcgtactt ... tttgttgcagGGCGCCTACCGGGACGACAACGGCCAGCCCGTCGTGCTCAGCTGCGTGCGCGAGGCCGAGCGCCGGATCGCGGGCAACCTCAACAT