1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AAGCTGGAGTACCGCTGCCGCACAGACTGCAGCGCGTGCGCACTGgtacgcccccttctcctcttctccagcgcacgcatatatacggataccggcatggtgacaagcccacag
species | Zea mays |
transcript | GRMZM2G146463_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGGAGTACCGCTGCCGCACAGACTGCAGCGCGTGCGCACTG AGTACGCAGGCAGGACGCGACGCAGCGCCGAAGCACCAAGGATGGAGCCCGEST: gi|71443280|gb|DR824330.1|DR824330
genomic: AAGCTGGAGTACCGCTGCCGCACAGACTGCAGCGCGTGCGCACTGgtacgccccc ... aagcccacagAGTACGCAGGCAGGACGCGACGCAGCGCCGAAGCAACAAGGATGGCGCCCG
EST: AAGCTGGAGTACCGCTGCCGCACAGACTGCAGCGCGTGCGCAC-- --T-----GGCAGGACGCGACGCAGCGCCGAAGCAACAAGGATGGCGCCCGEST: gi|78088431|gb|DV516824.1|DV516824
genomic: AAGCTGGAGTACCGCTGCCGCACAGACTGCAGCGCGTGCGCACTGgtacgccccc ... aagcccacagAGTACGCAGGCAGGACGCGACGCAGCGCCGAAGCAACAAGGATGGCGCCCG
EST: CTGGAGTACCGCTGCCGCACAGACTGCAGCGCGTGCGCAC-- --T-----GGCAGGACGCGACGCAGCGCCGAAGCAACAAGGATGGCGCCCGEST: gi|211092682|gb|FL286915.1|FL286915
genomic: CTGGAGTACCGCTGCCGCACAGACTGCAGCGCGTGCGCACTGgtacgccccc ... aagcccacagAGTACGCAGGCAGGACGCGACGCAGCGCCGAAGCAACAAGGATGGCGCCCG
EST: AAGCTGGAGTACCGCTGCCGCACAGACTGCAGCGCGTGCGCACTG AGTACGCAGGCAGGACGCGACGCAGCGCCGAAGCACCAAGGATGGAGCCCGEST: gi|211095158|gb|FL286931.1|FL286931
genomic: AAGCTGGAGTACCGCTGCCGCACAGACTGCAGCGCGTGCGCACTGgtacgccccc ... aagcccacagAGTACGCAGGCAGGACGCGACGCAGCGCCGAAGCAACAAGGATGGCGCCCG
EST: AAGCTGGAGTACCGCTGCCGCACAGAACTGCAGCGCGTGCGCACTG AGTACGCAGGCAGG
genomic: AAGCTGGAGTACCGCTGCCGCACAG-ACTGCAGCGCGTGCGCACTGgtacgccccc ... aagcccacagAGTACGCAGGCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTGGAGTACCGCTGCCGCACAGACTGCAGCGCGTGCGCACTGgtacgcccccttctcctcttctccagcgcacgcatatatacggataccggcatggtgacaagcccacag
- GCTGGA
- - - - - - - - - - - - - CTGCAG