1 5' 3' | 2 5' 3' | 3 5' 3' |
CTTTGCGTTGTCGCAGGATGGGAGGCTCATTGCGACTGCTAGCACCAAGGGGACTCTTGTTAGAATCTACAATGCAGCTGAAGGCAATCTCTTGCAGGAAgtaagctttctttcacgtgctcgtagctgtattgtatacatgtacgttctgttgggtgacgttgcaactgataaaaactgattttgtctagtatgatgca...
species | Zea mays |
transcript | GRMZM2G146280_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AATGCAGCTGAAGGCAATCTCTTGCAGAAA GTAAGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCTTTCTCGAATEST: gi|149097649|gb|EE183545.2|EE183545
genomic: AATGCAGCTGAAGGCAATCTCTTGCAGGAAgtaagctttc ... tctattgtagGTAAGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCTTTCTCGAAT
EST: GGACTCTTGTTAGAATCTACAATGCAGCTGAAGGCAATCTCTTGCAGGAA GTAAGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCTTTCTCGAATEST: gi|31358528|gb|CD442885.1|CD442885
genomic: GGACTCTTGTTAGAATCTACAATGCAGCTGAAGGCAATCTCTTGCAGGAAgtaagctttc ... tctattgtagGTAAGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCTTTCTCGAAT
EST: GGACTCTTGTTAGAATCTACAATGCAGCTGAAGGCAATCTCTTGCAGGAA GTAAGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCTTTCTCGAATEST: gi|149099526|gb|EE185564.2|EE185564
genomic: GGACTCTTGTTAGAATCTACAATGCAGCTGAAGGCAATCTCTTGCAGGAAgtaagctttc ... tctattgtagGTAAGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCTTTCTCGAAT
EST: GGACTCTTGTTAGAATCTACAATGCAGCTGAAGGCAATCTCTTGCAGGAA GTAAGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCTTTCTCGAATEST: gi|24766204|gb|CA401359.1|CA401359
genomic: GGACTCTTGTTAGAATCTACAATGCAGCTGAAGGCAATCTCTTGCAGGAAgtaagctttc ... tctattgtagGTAAGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCTTTCTCGAAT
EST: AATGCAGCTGAAGGCAATCTCTTGCAGGAA GTAAGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCTTTCTCGAAT
genomic: AATGCAGCTGAAGGCAATCTCTTGCAGGAAgtaagctttc ... tctattgtagGTAAGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCTTTCTCGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGCGTTGTCGCAGGATGGGAGGCTCATTGCGACTGCTAGCACCAAGGGGACTCTTGTTAGAATCTACAATGCAGCTGAAGGCAATCTCTTGCAGGAAgtaagctttctttcacgtgctcgtagctgtattgtatacatgtacgttctgttgggtgacgttgcaactgataaaaactgattttgtctagtatgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG