Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCCACTGTCTCCAACTCTCCATCGCGTCTGCTACGCCTCTCCTGCAGGACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtccccctaggacccaggctccaggcaccaccgttctctcgatttgaattcgacgttacgcagagttttggtttgatctctgatggcatccgctcccccgtgtgcag

Basic information

species Zea mays
transcript GRMZM2G146206_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g62420.2 (Oryza sativa), 5'ss of exon 1
AACTCCACTGTCTCCAACTCTCCATCGCGTCTGCTACGCCTC--TCCTGCAGGACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagt---ccccctaggacccag-gctccaggcaccaccgttctctcgatttgaattcgacgttacgcagagttttggtttgatctct---gatggcatccgctccc-ccgtgtgcag
  ||||||     ||  ||  |     ||   ||| | ||    ||  |  |  | | | |||||| |||||||||||||||| || |||||||||||||||||||||   ||||| || ||     |   ||    |||   | |    ||   | |  ||  | |    || | |  || |||   | |   ||||   | ||||    | | ||||||
--CTCCACGAAAACCCTCTGCCTCCTTCGCTCGCTGCACCCTCGTCTCGGCGATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattccccccagcactagtcgtctcacaatccagattccggatgagccggagacgctgctgatgagtgatgaggcttgggttttatcgatgcgctgcgctgttgctgcgtgcag

upper sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g62420.5 (Oryza sativa), 5'ss of exon 1
AACTCCACTGTCTCCAACTCTCCATCGCGTCTGCTACGCCTC--TCCTGCAGGACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagt---ccccctaggacccag-gctccaggcaccaccgttctctcgatttgaattcgacgttacgcagagttttggtttgatctctgatggcatccgctcccccgtgtgcag
  ||||||     ||  ||  |     ||   ||| | ||    ||  |  |  | | | |||||| |||||||||||||||| || |||||||||||||||||||||   ||||| || ||     |   ||    |||   | |    ||   | |  ||  | |    || | |  || |||   | |   |  || ||||             
--CTCCACGAAAACCCTCTGCCTCCTTCGCTCGCTGCACCCTCGTCTCGGCGATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattccccccagcactagtcgtctcacaatccagattccggatgagccggagacgctgctgatgagtgatgaggcttgggttttatcg--atgcgct-------------

upper sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G41120.1 (Glycine max), 5'ss of exon 1
AACTCCACTGTCTCCAACTCTCCATCGCGTCTGCTACGCCTCTCCTGCAGGACGACCAATGGCTTC--CAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtccccctaggacccaggctccaggcaccaccgttctctcgatttgaat--tcgacgttacgcagagttttggtt--tgatctctgatggcatccgctcccccgtgtgcag
   | | || ||||   ||||     || ||| |     ||||| |      |||  ||   | |   ||| || |||||||| ||||||||||||||||||||| ||  |  |    | |   || ||      ||| || | |   |||| ||   ||   ||      | | | | |   |||  |||       ||  |||            
-GTTTCTCTTTCTCTTTCTCTGT-CTGCTTCTTCACTTTCTCTCGTTTCAATCGAAAAAAATCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttcaat----cactatcttcaccatttacctttttttttttttgcatgtccggtttttgttttaatctcgatgagtgaaatctcggtagttctactct-----------

upper sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA15G04290.2 (Glycine max), 5'ss of exon 1
----AACTCCACTGTCTCCAACTCTCCATCGCGTCTGCTACGCCTCTCCTGCAGGACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtccccctaggacccaggctccaggcaccaccgttctctcgatt---tgaattcgacgttacgcagagttttggtttgatctctgatggcatccgctcccccgtgtgcag
       | | |||||| |   ||| ||     |||  |     ||     ||  || |  |||      ||| || |||||||| ||||||||||||||||||||| ||  |  |      |   |||||   |||    || | | | ||   |||||| |   | |    ||    ||  |  |     | | |  ||  |||  |         
CAAGGGTTTCTCTGTCTGC--TTCTTCACTTTCTCTCGTTTCAATCGAAACCAAAACAA--AATCATGGGCAGAAAATTCTTCGTTGGTGGCAACTGGAAATGCgtatgtttcaatcactatctt-ctccacttacctttctttttttgtttctgtgaatttgttttaatctcga----tgaatgaaatctcggtagt-tctactctaca--------

upper sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 1
lower sequence: AT3G55440.1 (Arabidopsis thaliana), 5'ss of exon 1
-AACTCCACTGTCTCCAACTCTCCATCGCGTCTGCTACGCCTCTCCTGCAGGACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtccccctaggacccaggctccaggcaccaccgttctctcgatttgaattcgacgttacgcagagttttggtttgatctctgatggcatccgctcccccgtgtgcag
   |||||  |||  |   |||    | |   || | |  | |      |  |      ||     |||| ||||||||||| || |||||||||||||| ||||||   | |     ||         |||||    || |     ||   | | ||   | | | ||  |   ||   |    |      ||||    |           
TCTCTCCATCGTCGTCGTATCTGTGACTCTCGTGAT-CATCGCCTGAAAAAAATTTGAGATAATGGCCAGAAAGTTCTTCGTCGGAGGCAACTGGAAATGTgtaagtgatcttta---ccttctattgcgcacc-ttattattagtcttgtcacttgatccttccccga--tcaagtcaaagagatcggaaaatcccgatcttaaga-----

upper sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S3_334V6.1 (Physcomitrella patens), 5'ss of exon 1
AACTCCACTGTCTCCAACTCT-CCATCGCG--TCTGCTACGCCTCTCCTGCAGGACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtccccctaggacccaggctccaggcacca----ccgttctctcgatttgaattcgacgttacgcagagttttggtttgatctctgatggcatccgctcccccgtgtgcag
  || | | ||| || | |   ||||| ||  ||| |   |    | | |||||       |||  |||  ||||||| ||||| |||||||||||||||||||| ||||  | |    ||     |   |     |     | || | || |||   |   ||   | |    | |||||     ||||  | | |       |             
--CTAC-CCGTCACCGATTTGACCATCCCGCTTCTCCAGTGTGGTTTCCGCAGGTTTCAGGATGTGTTCGCGGAAGTTTTTCGTTGGTGGCAACTGGAAATGCgtcagtcttcatgtccccttccttattgatgatagacttcattttttccattgtgagcagagtattcatgaatttttgt----atcttcggttgtgagaatttt-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30160646|gb|CB924375.1|CB924375
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211416108|gb|FL411159.1|FL411159
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|6021382|gb|AW066310.1|AW066310
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|38568995|gb|CF974880.1|CF974880
EST:     GTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|67021888|gb|CO450637.1|CO450637
EST:     ACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAANCTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: ACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAA-CTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211368671|gb|FL393821.1|FL393821
EST:     GACGACCAATGGCTTCCACGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211332034|gb|FL380493.1|FL380493
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|30591364|gb|CD052336.1|CD052336
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCGACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211076634|gb|FL394053.1|FL394053
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|38229733|gb|CF920046.1|CF920046
EST:     GGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211387019|gb|FL373417.1|FL373417
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|32851161|gb|CD990842.1|CD990842
EST:     GGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATCC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|149095398|gb|EE181040.2|EE181040
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|74242319|gb|DT650233.1|DT650233
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|71436570|gb|DR817620.1|DR817620
EST:     CTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: CTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|111146727|gb|EE258280.1|EE258280
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211450227|gb|FL406328.1|FL406328
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211461034|gb|FL374792.1|FL374792
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211176657|gb|FL426231.1|FL426231
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|149097486|gb|EE183358.2|EE183358
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|32909131|gb|CF013943.1|CF013943
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATCC                         AACGGTACTGGCGAGGACTTGATGNTTGATCGTCACCGTGCTCAACCAAGC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAG-AAGATCGTCACCGTGCTCAACCAAGC
EST: gi|149005099|gb|EE039628.2|EE039628
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|28566674|gb|CB278322.1|CB278322
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|37361179|gb|CF602468.1|CF602468
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|148971477|gb|EE022172.2|EE022172
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|37361339|gb|CF602628.1|CF602628
EST:     GACGACCAATGGCTTCCAGGAAGTTCCTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|34391231|gb|CF384459.1|CF384459
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|28188261|gb|CB179871.1|CB179871
EST:     GACNACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGANGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|78077610|gb|DV506044.1|DV506044
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCCTCCCCGTGCTCCACCCAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|149105684|gb|EE291242.2|EE291242
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|33770896|gb|CF273190.1|CF273190
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|148995363|gb|EE034577.2|EE034577
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|26557616|gb|CA829851.1|CA829851
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGAC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGAC
EST: gi|28187879|gb|CB179489.1|CB179489
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211140432|gb|FL390021.1|FL390021
EST:     ACGACCAATGGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: ACGACCAAT-GGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|33770918|gb|CF273212.1|CF273212
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211405784|gb|FL400096.1|FL400096
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|67017127|gb|CO445876.1|CO445876
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|71330645|gb|DR802096.1|DR802096
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|37361129|gb|CF602418.1|CF602418
EST:     GACGACCAATGGCTTCCAGGAAATTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|34391269|gb|CF384497.1|CF384497
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211238643|gb|FL403493.1|FL403493
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|31351356|gb|CD435713.1|CD435713
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|33771263|gb|CF273442.1|CF273442
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|38229553|gb|CF919866.1|CF919866
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|76928137|gb|DV171503.1|DV171503
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|31354853|gb|CD439210.1|CD439210
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGCAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|61118911|gb|DN559872.1|DN559872
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211539436|gb|FL405544.1|FL405544
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|6021299|gb|AW066227.1|AW066227
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGA-CG-CACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211247588|gb|FL403551.1|FL403551
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|32915342|gb|CF020154.1|CF020154
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATCC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211123868|gb|FL376717.1|FL376717
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211504304|gb|FL391671.1|FL391671
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|28576049|gb|CB281941.1|CB281941
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|211398253|gb|FL405436.1|FL405436
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|33770853|gb|CF273147.1|CF273147
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC
EST: gi|30160504|gb|CB924233.1|CB924233
EST:     GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGC                         AACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACGAAGCC
genomic: GACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 80

AACTCCACTGTCTCCAACTCTCCATCGCGTCTGCTACGCCTCTCCTGCAGGACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCCGAGGTGCCCTCTGAAGACGTCGTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 152

AACTCCACTGTCTCCAACTCTCCATCGCGTCTGCTACGCCTCTCCTGCAGGACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCCGAGGTGCCCTCTGAAGACGTCGTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 59

AACTCCACTGTCTCCAACTCTCCATCGCGTCTGCTACGCCTCTCCTGCAGGACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCCGAGGTGCCCTCTGAAGACGTCGTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 299

AACTCCACTGTCTCCAACTCTCCATCGCGTCTGCTACGCCTCTCCTGCAGGACGACCAATGGCTTCCAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtcccc ... ccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCCGAGGTGCCCTCTGAAGACGTCGTCG