Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGAGGCGGAGATCTCGCCATCAACACTATATGCCATTGCCTGTGTCACAGAGGGGGTGTCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttagtttggtgtgtttgcaaagttttatggtgttgcatttctgttcaaagacttattatacttgttgcatgtttgtag

Basic information

species Zea mays
transcript GRMZM2G145638_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 5
AACGAGGCGGAGATCTCGCCATCAACACTATATGCCATTGCCTGTGTCACAGAGGGGGTGTCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttagtttggtgtgtttgcaaagttttatggtgttgcatttctgttcaaagacttattatacttgttgcatgtttgtag
|||||||||||||| || ||||| ||||| |||||||||||||| ||||  |||||  |  ||||||| || ||||| || |||||||| |||||||||||| |||  | |||  |||||    | |||  ||||  |||   |||||   ||    | |    || |||||   ||| |  ||
AACGAGGCGGAGATATCACCATCGACACTGTATGCCATTGCCTGCGTCATGGAGGGTATACCGTTCATTAACGGGAGTCCTCAGAACACCTTTGTGCCTGgtatgt--aattttctgtgt----agagtagtatgcggtttattttct---caggttcatggcttatttgtttactgtgtacag

upper sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ37320 (Selaginella moellendorffii), 5'ss of exon 5
AACGAGGCGGAGATCTCGCCATCAACACTATATGCCATTGCCTGTGTCACAGAGGGGGTGTCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttagtttggtgtgtttgcaaagttttatggtgttgcatttctgttcaaagacttattatacttgttgcatgtttgtag
 ||||| | || ||||| || || ||  | || ||| | || ||| ||  |||||| ||  | |||||||| ||||||||||||||||||||||| || |||||  || ||||    | | | | |  |||| | |  ||||       |   |||  |   ||| |  | ||||||       
GACGAGCCCGAAATCTCTCCCTCCACTATTTACGCCTTGGCATGTATCCAAGAGGGTGTTCCTTTCATCAACGGGAGCCCCCAGAACACTTTTGTCCCAGgtgtccttcgttt----tttctcccagtttttctcggtttgc-------taagaagtgtgtgtatgcacggtgcatggccag--

upper sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ27629 (Selaginella moellendorffii), 5'ss of exon 5
AACGAGGCGGAGATCTCGCCATCAACACTATATGCCATTGCCTGTGTCACAGAGGGGGTGTCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttagtttggtgtgtttgcaaagttttatggtgttgcatttctgttcaaagacttattatacttgttgcatgtttgtag
 ||||| | || ||||| || || ||  | || ||| | || ||| ||  |||||| ||  | |||||||| ||||||||||||||||||||||| || |||||  || ||||    | | | | |  |||| | |  ||||       |   |||  |   ||| |  | ||||||       
GACGAGCCCGAAATCTCTCCCTCCACTATTTACGCCTTGGCGTGTATCCAAGAGGGTGTTCCTTTCATCAACGGGAGCCCCCAGAACACTTTTGTCCCAGgtgtccttcgttt----tttctcccagtttttctcggtttgc-------taagaagtgtgtgtatgcacggtgcatggccag--