Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGACCTCGATCGCTTCGGCAAGGCCGTCAAGCTCACCGCCTTCAACCCTTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctcccctctacctaaacacgcagcgtcgctgcgagatgtttttgttttgaaccggggtttggcttttcctttggtcag

Basic information

species Zea mays
transcript GRMZM2G144995_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144995_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g22880.1 (Oryza sativa), 5'ss of exon 1
CTGGACCTCGATCGCTTCGGCAAGGCCGTCAAGCTCACCGCCTTCAACCCTTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctcccctctacctaaacac-gcagc--gtcgctgcgagatgtttttgttttgaaccggggtttggcttttcctttggtcag--------------
 | |||||||| |||||||||||||||||||||||| ||||||||| ||| |||||||| ||||| || || ||||| ||||||||||| || ||||||||| | | | |     | |     | | || ||  |     ||| |||   |   | ||   |     ||||  ||||  ||  | |                
GTCGACCTCGACCGCTTCGGCAAGGCCGTCAAGCTCGCCGCCTTCACCCCCTTCTCCTCCGCCGTGGACGCCCTCAACCAGTGCAACGCCATCTCCGAAGgtcctctcgcgttcttgcgccgccgccgccgccagctcaggcgggattcgtgcttcttctccttttttttgttttttttttctgacgccattccgcgtgcag

upper sequence: GRMZM2G144995_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G11560.1 (Glycine max), 5'ss of exon 1
CTGGACCTCGATCGCTTCGGCAAGGCCGTCAAGCTCACCGCCTTCAACCCTTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgt-------------tccccctcccctctaccta--aacacgcagc-gtcgctgcgagatgtttttgttttgaaccggggtttggcttttcctttggtcag
   |||||| |  | |||||||||| |||||||||   | |||||||||| ||| |||| ||| |||| || ||||| |||||||||||  | |||||||||             || | |||||||   | |   |   |  |   ||||    | |         |||  ||                  ||   | | 
TCCGACCTCAACAGGTTCGGCAAGGTCGTCAAGCTTCGCTCCTTCAACCCCTTCACCTCCGCCCTCGACGCTCTCAAACAGTGCAACGCCGTTTCCGAAGgtgaaatagttacactctctctccccttcgcttgttattgcttattagtcgaattgtggaagcccaatttgtaaataataggaaatccccggttatataa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211115641|gb|FK987578.1|FK987578
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|31998165|gb|CD661961.1|CD661961
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211115652|gb|FK987589.1|FK987589
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211115649|gb|FK987586.1|FK987586
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAA-                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211115651|gb|FK987588.1|FK987588
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|22472694|gb|BU037174.1|BU037174
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|19351456|gb|BM895988.1|BM895988
EST:     ACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: ACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|31998583|gb|CD662142.1|CD662142
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|149046499|gb|EE048023.2|EE048023
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211115646|gb|FK987583.1|FK987583
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|29544497|gb|CB604877.1|CB604877
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211114854|gb|FK987567.1|FK987567
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|19272593|gb|BM888849.1|BM888849
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|60347459|gb|DN214432.1|DN214432
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211115643|gb|FK987580.1|FK987580
EST:     TTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTTATATCCGAAG                         G-ATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCT-ATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|22491398|gb|BU051321.1|BU051321
EST:     TCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211114862|gb|FK987575.1|FK987575
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|148969192|gb|EE019938.2|EE019938
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|31997862|gb|CD661811.1|CD661811
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211115650|gb|FK987587.1|FK987587
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211115648|gb|FK987585.1|FK987585
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211115644|gb|FK987581.1|FK987581
EST:     TTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTTATATCCGAAG                         G-ATCATGACCGATGAACTGAGGAGTTTTCCTGGAGCTGAACCTGCCGAAG
genomic: TTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCT-ATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTT-CCTGGAGCTGAACCTGCCGAAG
EST: gi|148964049|gb|EE015199.2|EE015199
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|31612233|gb|CD568855.1|CD568855
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|31406046|gb|CD484778.1|CD484778
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|78118785|gb|DV537169.1|DV537169
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|31406428|gb|CD485160.1|CD485160
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|87152426|gb|DY397215.1|DY397215
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|149009676|gb|EE041608.2|EE041608
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211114860|gb|FK987573.1|FK987573
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         G-ATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211115642|gb|FK987579.1|FK987579
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAGCCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211115640|gb|FK987577.1|FK987577
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|67016760|gb|CO445509.1|CO445509
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211115647|gb|FK987584.1|FK987584
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|29130492|gb|CB381196.1|CB381196
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|149094663|gb|EE180207.2|EE180207
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211114861|gb|FK987574.1|FK987574
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|14883548|gb|BI273409.1|BI273409
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211114858|gb|FK987571.1|FK987571
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAA-                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|211114856|gb|FK987569.1|FK987569
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|148948613|gb|EC894142.2|EC894142
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|22521190|gb|BU080001.1|BU080001
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
EST: gi|148932756|gb|EE285396.2|EE285396
EST:     TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAG                         GGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC
genomic: TTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 615

CTGGACCTCGATCGCTTCGGCAAGGCCGTCAAGCTCACCGCCTTCAACCCTTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGCCCAAGGAGGGGAAGAAGGCCAAATACAGCCTCGGGGTCGTCGAGCCCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 182

CTGGACCTCGATCGCTTCGGCAAGGCCGTCAAGCTCACCGCCTTCAACCCTTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGCCCAAGGAGGGGAAGAAGGCCAAATACAGCCTCGGGGTCGTCGAGCCCAA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 256

CTGGACCTCGATCGCTTCGGCAAGGCCGTCAAGCTCACCGCCTTCAACCCTTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGCCCAAGGAGGGGAAGAAGGCCAAATACAGCCTCGGGGTCGTCGAGCCCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 171

CTGGACCTCGATCGCTTCGGCAAGGCCGTCAAGCTCACCGCCTTCAACCCTTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctc ... ctttggtcagGGATCATGACCGATGAACTGAGGAGTTTCCTGGAGCTGAACCTGCCGAAGCCCAAGGAGGGGAAGAAGGCCAAATACAGCCTCGGGGTCGTCGAGCCCAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGGACCTCGATCGCTTCGGCAAGGCCGTCAAGCTCACCGCCTTCAACCCTTTCTCCTCTGCCGTCGATGCACTCAATCAGTGCAACGCTATATCCGAAGgttccccctcccctctacctaaacacgcagcgtcgctgcgagatgtttttgttttgaaccggggtttggcttttcctttggtcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC