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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCACTGTGCTGCAGCGCCTCGACCCGGCCGTTGAGGATATTCTCATCACCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatgcgtgctcaggcgcgcgcctgtctgattcgcctgaccctgtgattcgtggtgaataatttggctggttggaccttattgtgtgctcgtgttgcgtgttttatgtag

Basic information

species Zea mays
transcript GRMZM2G144618_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144618_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g14580.1 (Oryza sativa), 5'ss of exon 1
CCGCACTGTGCTGCAGCGCCTCGACCCGGCCGTTGAGGATATTCTCATCACCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatgcgtgctcaggcgcgcgcctgtctgattcgcctgaccctgtgattcgtggtgaataatttggctggttggaccttattgtgtgctcgtgttgcgtgttttatgtag
|  ||| ||||| |||||||||||||| ||||| ||||| || ||||||||||| |  ||||||||||| |||||||| |||||| |  |||||||||||||  | |  || |  |       |    | | | ||      ||  | |||  ||| | ||  |   |||| |   ||   | | | |  |   | || |  ||  |   || ||
CATCACCGTGCTCCAGCGCCTCGACCCCGCCGTCGAGGACATCCTCATCACCGCCGGCCACGTCACGCTCTACGACTTCGACACCAACCTCAACCAGTGGgtaagatg-gcttttt-------gtttttttgttatctcttcgattc-gtggctcg-gttgcttcgcttggttatgtgcttcatgtcgatttggcctgatttgttgtcgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211507640|gb|FL212617.1|FL212617
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|71441642|gb|DR822692.1|DR822692
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCGACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|50322552|gb|CO517678.1|CO517678
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|211505290|gb|FL212613.1|FL212613
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|50322824|gb|CO517950.1|CO517950
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|71448550|gb|DR829600.1|DR829600
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|89761719|gb|DY689622.1|DY689622
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|71443863|gb|DR824913.1|DR824913
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|211507637|gb|FL212614.1|FL212614
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGATGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|93012223|gb|EB637743.1|EB637743
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|211507639|gb|FL212616.1|FL212616
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|76286410|gb|DV025978.1|DV025978
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|149014053|gb|EE043578.2|EE043578
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|211507638|gb|FL212615.1|FL212615
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGATGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
EST: gi|76017159|gb|DT944329.1|DT944329
EST:     CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGG                         AGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG
genomic: CCGCGGCTCACGTCACGCTGTACGACTTTGACACCGATGTCAACCAGTGGgtgcgttatg ... ttttatgtagAGACGGAAGGACGTGGAGGGGTCGCTCTTCGTCGTCAAGAG