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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCCGTGGAGCACTATACCCAGGTTAAGCTTAAGAAGCGCGGCTCTGACACCAAGTACCTTGCCACCGTCCTGGCCATCGGCACAGAGTGCGATATTGgtgcgcccgctcttcccatccctgccctgcctccattgtttatttcttactatcgttaattttcttattgttatgtaaccatgaaaatcagatgcataat...

Basic information

species Zea mays
transcript GRMZM2G144501_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144501_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 5'ss of exon 1
CACTCCGTGGAGCACTATACCCAGGTTAAGCTTAAGAAGCGCGGCTCTGACACCAAGTACCTTGCCACCGTCCTGGCCATCGGCACAGAGTGCGATATTGgtgcg-cccgctcttcccatccctgccctgcctccattgtttatttcttactatcgttaattttcttattgttatgtaaccatgaaaatcagatgcataat
||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || || |||||||| ||||||  |     | |||| |  |     ||||| |   |  ||  ||    | | | |  | | |  |  || |    |       || ||       |||  
CACTCCGTGGAGCACTACACCCAGGTCAAGCTTAAGAAGCGCGGCTCCGACACCAAGTACCTGGCCACGGTCCTCGCCATTGGGACGGAGTGCGACATTGgtatgatttccccttctctgctgcaacctgcattgttctttccttctcaattgttgcaattgtagtacttatccaatgcttcctaagattgctccaatag-

upper sequence: GRMZM2G144501_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA01G16820.1 (Glycine max), 5'ss of exon 1
CACTCCGTGGAGCACTATACCCAGGTTAAGCTTAAGAAGCGCGGCTCTGACACCAAGTACCTTGCCACCGTCCTGGCCATCGGCACAGAGTGCGATATTGgtgcgcccgctcttcccatccctgccctgcctccattgtttatttcttactatcgttaattttcttattgttatgtaaccatgaaaatcagatgcataat----
|| || || |||||  | || || || || || ||||| ||||||||||| ||||| ||| | ||||||||||| |||||||| || ||||| ||||| |||    |   |   |       |  |||  || |||| |     |   | |   |  |   | ||| ||||| | |||  ||     |  | ||| |       
CATTCTGTTGAGCATCACACACAAGTCAAACTCAAGAAACGCGGCTCTGATACCAAATACTTGGCCACCGTCCTCGCCATCGGGACCGAGTGTGATATCGgtatttcaatttcactttatattatcct-tcttcattttagggatggaatttatgagacagtactttttgttct-taattattttgtt--ggtgcctttctatc

upper sequence: GRMZM2G144501_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ16952 (Selaginella moellendorffii), 5'ss of exon 1
CACTCCGTGGAGCACTATACCCAGGTTAAGCTTAAGAAGCGCGGCTCTGACACCAAGTACCTTGCCACCGTCCTGGCCATCGGCACAGAGTGCGATATTGgtgcgcccgctcttcccatccctgccctgcctccattgtttatttcttactatcgttaattttcttattgttatgtaaccatgaaaatcagatgcataat
||||| ||||||||  | || ||||| ||| | |||||||| ||||| |||||||||||||| |||| ||| || ||||| || || ||||| || ||||||| |       |||| | |  |        |    |||||||  |||  | | |||   ||  || ||  |||                          
CACTCGGTGGAGCATCACACACAGGTGAAGATCAAGAAGCGAGGCTCGGACACCAAGTACCTGGCCAACGTTCTTGCCATTGGAACCGAGTGTGACATTGgtgagt------ttccaagcttt--------tatggtgtttatgacttctttttgtttgcttctttgtt-ctatcag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33091067|gb|CF051061.1|CF051061
EST:     ACCTTGCCACCGTCCTGGCCATCGGCATAGAGTGCGATATTG                         CGCTCTTAACTGTCAATGACGATGAATTCTGGGAAGGAGTTTCACCTGTCG
genomic: ACCTTGCCACCGTCCTGGCCATCGGCACAGAGTGCGATATTGgtgcgcccgc ... tctgtctcagCGCTCTTAACTGTCAATGACGATGAATTCTGGGAAGGAGTTTCACCTGTCG
EST: gi|101391369|gb|EB817619.1|EB817619
EST:     CACCAAGTACCTTGCCACCGTCCTGGCCATCGGCACAGAGTGCGATATTG                         CGCTCTTAACTGTCAATGACGATGAATTCTGGGAAGGAGTTTCACCTGTCG
genomic: CACCAAGTACCTTGCCACCGTCCTGGCCATCGGCACAGAGTGCGATATTGgtgcgcccgc ... tctgtctcagCGCTCTTAACTGTCAATGACGATGAATTCTGGGAAGGAGTTTCACCTGTCG