1 5' 3' | 2 5' 3' | 3 5' 3' |
CATCCTCTACTTCGAGGCGCAGCGGTCCGGCGTGCTCCCGCCCAACCAGAGGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGAgtatgcacaacgcgtctctcgttgcattaattagcaagcaagcattgtgaccatggcagctgggttcgtcgctgtgctgaacacgatttttgttttggttcttttatgttttgtctcgccggacag
species | Zea mays |
transcript | GRMZM2G143747_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGA GTGGACCTCGTCGGAGGGTACTACGACGCAGGCGACAACGTGAAGTTCGGCEST: gi|76927311|gb|DV171235.1|DV171235
genomic: GGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGAgtatgcacaa ... cgccggacagGTGGACCTCGTCGGAGGGTACTACGACGCAGGCGACAACGTGAAGTTCGGC
EST: GGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGA GTGGACCTCGTCGGAGGGTACTACGACGCAGGCGACAACGTGAAGTTCGGCEST: gi|89761270|gb|DY689355.1|DY689355
genomic: GGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGAgtatgcacaa ... cgccggacagGTGGACCTCGTCGGAGGGTACTACGACGCAGGCGACAACGTGAAGTTCGGC
EST: GGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGA GTGGACCTCGTCGGAGGGTACTACGACGCAGGCGACAACGTGAAGTTCGGCEST: gi|71447399|gb|DR828449.1|DR828449
genomic: GGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGAgtatgcacaa ... cgccggacagGTGGACCTCGTCGGAGGGTACTACGACGCAGGCGACAACGTGAAGTTCGGC
EST: GGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGA GTGGACCTCGTCGGAGGGTACTACGACGCAGGCGACAACGTGAAGTTCGGCEST: gi|76919541|gb|DV167769.1|DV167769
genomic: GGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGAgtatgcacaa ... cgccggacagGTGGACCTCGTCGGAGGGTACTACGACGCAGGCGACAACGTGAAGTTCGGC
EST: GGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGA GTGGACCTCGTCGGAGGGTACTACGACGCAGGCGACAACGTGAAGTTCGGCEST: gi|149075805|gb|EE164339.2|EE164339
genomic: GGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGAgtatgcacaa ... cgccggacagGTGGACCTCGTCGGAGGGTACTACGACGCAGGCGACAACGTGAAGTTCGGC
EST: GGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGA GTGGACCTCGTCGGAGGGTACTACGACGCAGGCGACAACGTGAAGTTCGGC
genomic: GGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGAgtatgcacaa ... cgccggacagGTGGACCTCGTCGGAGGGTACTACGACGCAGGCGACAACGTGAAGTTCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCCTCTACTTCGAGGCGCAGCGGTCCGGCGTGCTCCCGCCCAACCAGAGGATCACCTGGAGAGAGAACTCCGGCCTCTTCGATGGAAAGGCCAACGGAgtatgcacaacgcgtctctcgttgcattaattagcaagcaagcattgtgaccatggcagctgggttcgtcgctgtgctgaacacgatttttgttttggttcttttatgttttgtctcgccggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA