1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATCGGTCGGCGCCATGTCCAAGGCCAGGGTCTACGCCGACGTCAACGTGCTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgctatctcgcgcgctctcctctcgcgtcctccgcccctcctgcgcataaccctacctcaagcttcggtttcgcagtgctacgagcgtgcctgta...
species | Zea mays |
transcript | GRMZM2G143602_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|211322748|gb|FL352369.1|FL352369
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAAGTCGGGAGAAGAAAATACAGEST: gi|211320448|gb|FL345953.1|FL345953
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|23199704|gb|BU582269.1|BU582269
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|211428133|gb|FL358030.1|FL358030
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAA-TACAGEST: gi|211404409|gb|FL337659.1|FL337659
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|32848629|gb|CD988310.1|CD988310
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: ACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|211532125|gb|FL350196.1|FL350196
genomic: ACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|211367442|gb|FL332752.1|FL332752
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|148979084|gb|EE026504.2|EE026504
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|13388534|gb|BG462212.1|BG462212
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACNNNNNNNNNGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|29576768|gb|CB616880.1|CB616880
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|211328912|gb|FL338504.1|FL338504
genomic: CGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|20507676|gb|BQ279725.1|BQ279725
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|26560171|gb|CA832406.1|CA832406
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG GGAAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAEST: gi|211244627|gb|FL362238.1|FL362238
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTG-AGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACA
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|87156472|gb|DY401261.1|DY401261
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|166616427|gb|EG186990.1|EG186990
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: GGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|71770653|gb|DR968590.1|DR968590
genomic: GGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAGEST: gi|211277424|gb|FL308994.1|FL308994
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
EST: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGG TGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
genomic: CTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgcta ... ctttgatcagTGAGCAGGATGACTATGAAGTTGTCAGGAAGGTCGGGAGAGGAAAATACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCGGTCGGCGCCATGTCCAAGGCCAGGGTCTACGCCGACGTCAACGTGCTGCGCCCCAAGGAGTACTGGGATTACGAGGCGCTCACCGTTCAATGGGGgtgagtgctatctcgcgcgctctcctctcgcgtcctccgcccctcctgcgcataaccctacctcaagcttcggtttcgcagtgctacgagcgtgcctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG