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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTCCTGCCTCTCTCCCCCTGCGAGCGATCGTGAGGGGATCGGGATGGCCTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAGgtgcggcacttacctatgcctctcccctctctcttcatcctcctggtggctcggctctcccagtgttgctctactcgcggtgtaaatcgtggcgcgttag...

Basic information

species Zea mays
transcript GRMZM2G142984_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211021992|gb|FL145360.1|FL145360
EST:     CTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAG                         ATAACAACCCAGAATTACCATGCCCCTCCTATCATATCGTTACCAAACCTG
genomic: CTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAGgtgcggcact ... tctcttgcagATAACAACCCAGAATTACCATGCCCCTCCTATCATATCGTTACCAAACCTG
EST: gi|60358611|gb|DN225584.1|DN225584
EST:     CTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAG                         ATAACAACCCAGAATTACCATGCCCCTCCTATCATATCGTTACCAAACCTG
genomic: CTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAGgtgcggcact ... tctcttgcagATAACAACCCAGAATTACCATGCCCCTCCTATCATATCGTTACCAAACCTG
EST: gi|211321691|gb|FL409781.1|FL409781
EST:     CTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAG                         ATAACAACCCAGAATTACCATGCCCCTCCTATCATATCGTTACCAAACCTG
genomic: CTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAGgtgcggcact ... tctcttgcagATAACAACCCAGAATTACCATGCCCCTCCTATCATATCGTTACCAAACCTG
EST: gi|211288495|gb|FL414818.1|FL414818
EST:     CTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAG                         ATAACAACCCAGAATTACCATGCCCCTCCTATCATATCGTTACCAAACCTG
genomic: CTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAGgtgcggcact ... tctcttgcagATAACAACCCAGAATTACCATGCCCCTCCTATCATATCGTTACCAAACCTG
EST: gi|211452427|gb|FK953962.1|FK953962
EST:     CTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAG                         ATAACAACCCAGAATTACCATGCCCCTCCTATCATATCGTTACCAAACCTG
genomic: CTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAGgtgcggcact ... tctcttgcagATAACAACCCAGAATTACCATGCCCCTCCTATCATATCGTTACCAAACCTG
EST: gi|211062502|gb|FL371367.1|FL371367
EST:     CTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAG                         ATAACAACCCAGAATTACCATGCCCCTCCTATCATATCGTTACCAAACCTG
genomic: CTCCCACCATTCCGAGCCCCTCGACCCCGCCGACGCTGACGACCCCTCAGgtgcggcact ... tctcttgcagATAACAACCCAGAATTACCATGCCCCTCCTATCATATCGTTACCAAACCTG