1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAGCCCCCTGCCCCCAGGTGTTGCGTCCCCCGTCGATCGCCACTCGACCCTGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagatccgttcattttgtgccgtggaatattgatgttttcgctgctgtgggcacctgaattctcaagttcctttctaatgatctttctgatctgc...
species | Zea mays |
transcript | GRMZM2G142693_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263297|gb|FL247912.1|FL247912
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211260869|gb|FL247908.1|FL247908
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211265737|gb|FL247925.1|FL247925
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263296|gb|FL247911.1|FL247911
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263308|gb|FL247923.1|FL247923
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: GGGTGGAAGTGAGTGCCGGGTGATCCATCCGGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263294|gb|FL247909.1|FL247909
genomic: -GGTGG-AGTGAGTGCC-GGTGATCCATCC-GGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263305|gb|FL247920.1|FL247920
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263302|gb|FL247917.1|FL247917
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263295|gb|FL247910.1|FL247910
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|71438786|gb|DR819836.1|DR819836
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263300|gb|FL247915.1|FL247915
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263303|gb|FL247918.1|FL247918
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263306|gb|FL247921.1|FL247921
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263307|gb|FL247922.1|FL247922
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: -CCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|67033577|gb|CO462326.1|CO462326
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211265736|gb|FL247924.1|FL247924
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263299|gb|FL247914.1|FL247914
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTT-CACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263298|gb|FL247913.1|FL247913
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263301|gb|FL247916.1|FL247916
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211265738|gb|FL247926.1|FL247926
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGGEST: gi|211263304|gb|FL247919.1|FL247919
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
EST: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCG GCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
genomic: TGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagat ... atgtctccagGCAAGGAGGTTTTGCACCATACAAGATCGTCAAAATTGCCGAAATGGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCCCCCTGCCCCCAGGTGTTGCGTCCCCCGTCGATCGCCACTCGACCCTGCTGGTGGAGTGAGTGCCGGTGATCCATCCGGAGTTGGATTTGTCCTCGgtaaggagatccgttcattttgtgccgtggaatattgatgttttcgctgctgtgggcacctgaattctcaagttcctttctaatgatctttctgatctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG