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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGAAGTTGATATCCTAACAGGAGCAACCACAATTCTGCGAAGCGACCTGGTGTATGACTGCGGGCAGAGCCTAAACCCTGCTGTAGACTTGGGCCAGgtcagctataaaatgaacacagttcacgcagaccattgtatcaacaaaaatgtgctcctcctctaaaaacactgttcatcatttatccag

Basic information

species Zea mays
transcript GRMZM2G141535_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141535_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g04860.1 (Oryza sativa), 5'ss of exon 8
GGTGGAAGTTGATATCCTAACAGGAGCAACCACAATTCTGCGAAGCGACCTGGTGTATGACTGCGGGCAGAGCCTAAACCCTGCTGTAGACTTGGGCCAGgtcagctataaaatgaacacagttcacgcagaccattgtatcaacaaaaatgtgctcctcctctaaaaacactgttcatcatttatccag-----------
 |||||||| ||| | || ||||| |||||||| || ||| | |||||||| ||||||||||| ||||||||||| || |||||||| ||||| |||||||||||  |   | | ||  |  ||     |||   |  | |    | | |  || |      ||     |    |   | ||  || |||           
-GTGGAAGTCGATGTGCTGACAGGGGCAACCACCATCCTGAGGAGCGACCTCGTGTATGACTGTGGGCAGAGCCTGAATCCTGCTGTCGACTTAGGCCAGgtcagtcagtcactcaat-ctttttttttagattttgttttatttagatagatgattacatcctggcctctgcatctgtgatacatacagccataaagttt

upper sequence: GRMZM2G141535_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g57680.1 (Oryza sativa), 5'ss of exon 8
GGTGGAAGTTGATATCCTAACAGGAGCAACCACAATTCTGCGAAGCGACCTGGTGTATGACTGCGGGCAGAGCCTAAACCCTGCTGTAGACTTGGGCCAGgtcagcta-taaaatgaacacagttcacgcagaccattgtatcaacaaaaatgtgctcctc-----ctctaaaaacactgttcatcatttatccag-----------------------------------
 |||||||| ||| | || || |||| |||||| || ||| | |||||||| ||||| ||||| ||||||||||| || |||||||| |||||||||||||||||  | |  | | ||     ||||      |  ||| |||  |||   || ||    |     |  |  ||  |       | | ||||                                       
-GTGGAAGTCGATGTGCTGACGGGAGAAACCACCATCCTGAGGAGCGACCTCGTGTACGACTGTGGGCAGAGCCTGAATCCTGCTGTGGACTTGGGCCAGgtcagtcaatctactaaattaccttcaaaatatcagttgcatctgcaattctgcgcgttgcaaaatcattgcaagaatgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgtgatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|62525891|gb|DN828539.1|DN828539
EST:     TGGTGTATGACTGCGGGCAGAGCCTAAACCCTGCTGTAGACTTGGGCCAG                         ATCGAGGGCTGCTTTGTCCAAGGAATAGGGTTCTTCACGAACGAGGACTAC
genomic: TGGTGTATGACTGCGGGCAGAGCCTAAACCCTGCTGTAGACTTGGGCCAGgtcagctata ... atttatccagATCGAGGGCTGCTTTGTCCAAGGAATAGGGTTCTTCACGAACGAGGACTAC