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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGCCACCCTCGGCTATGGCTACGTGTTGAGAGGCCAATCAGAGATGTAATGGAGCCTAGAGTTTATCCAAATCTTGAGGCTGTCGTTTCTGCTGTAGgtctctctcctctctttatgtcttgttctcgttgtgaacaggggatgttatggctgatctccatgtaccttattgaag

Basic information

species Zea mays
transcript GRMZM2G141418_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141418_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g46555.1 (Oryza sativa), 5'ss of exon 2
GCATGCCACCCTCGGCTATGGCTACGTGTTGAGAGGCCAATCAGAGATGTAATGGAGCCTAGAGTTTATCCAAATCTTGAGGCTGTCGTTTCTGCTG-TAGgtctctctcctctctttatgtcttgttctcgttgtga-acaggggatgttatggc--------tgatctccatgtaccttattgaag--
 ||||||| ||||| || ||| | ||||||||||||||||||||| ||  ||| |||||  |||| ||||||||||||||| |||  |||||||| | ||||||  | | || |||   |||    |  || || ||  | || ||  |||||||         ||| ||  || | | || ||  |   
-CATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCAGAAATACAATAGAGCCAGGAGTCTATCCAAATCTTGAGTCTGCTGTTTCTGCAGCTAGgtccgtgttctatctgactgttcaatgttcattatgttatagagggggttatggtcttatggatgacctttatttgcgttgttttaaag