1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGAGTGGCCCTTCAAGGAGCAGGAGCTCAAGGCGCTCGAGGCCCGACGCGCGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGGAGGCGCGCAAGGAGAGGgtatgtcatgtctggccgtctgttatcgttggtgctatccctgctgttagtttgtgtccggagcaaatagtatttcagtcttacagccgaatcaatcttc...
species | Zea mays |
transcript | GRMZM2G140602_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGGAGGCGCGCAAGGAGAGG GCTCGGAAGAGGAAGCTAGGATTGCTCGAGGATGAGGAAATTGCTAATTTGEST: gi|148945067|gb|EC890254.2|EC890254
genomic: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGGAGGCGCGCAAGGAGAGGgtatgtcatg ... cctttttcagGCTCGGAAGAGGAAGCTAGGATTGCTCGAGGATGAGGAAATTGCTAATTTG
EST: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGGAGGCGCGCAAGGAGAGG GCTCGGAAGAGGAAGCTAGGATTGCTCGAGGATGAGGAAATTGCTAATTTGEST: gi|20208060|gb|BQ134149.1|BQ134149
genomic: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGGAGGCGCGCAAGGAGAGGgtatgtcatg ... cctttttcagGCTCGGAAGAGGAAGCTAGGATTGCTCGAGGATGAGGAAATTGCTAATTTG
EST: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGGAGGCGCGCAAGGAGAGG GCTCGGAAGAGGAAGCTAGGATTGCTCGAGGATGAGGAAATTGCTAATTTGEST: gi|78081172|gb|DV509584.1|DV509584
genomic: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGGAGGCGCGCAAGGAGAGGgtatgtcatg ... cctttttcagGCTCGGAAGAGGAAGCTAGGATTGCTCGAGGATGAGGAAATTGCTAATTTG
EST: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGGAGGCGCGCAAGGAGAGG GCTCGGAAGAGGAAGCTAGGATTGCTCGAGGATGAGGAAATTGCTAATTTG
genomic: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGGAGGCGCGCAAGGAGAGGgtatgtcatg ... cctttttcagGCTCGGAAGAGGAAGCTAGGATTGCTCGAGGATGAGGAAATTGCTAATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGTGGCCCTTCAAGGAGCAGGAGCTCAAGGCGCTCGAGGCCCGACGCGCGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGGAGGCGCGCAAGGAGAGGgtatgtcatgtctggccgtctgttatcgttggtgctatccctgctgttagtttgtgtccggagcaaatagtatttcagtcttacagccgaatcaatcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG