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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgtgcatcagttccgggaaacggggttacatcgtgaaaatctgattgttcatcatgagaaatatgacgtgatctgggtttgatttctgttgtatag

Basic information

species Zea mays
transcript GRMZM2G140150_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G140150_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g50620.1 (Oryza sativa), 5'ss of exon 1
TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgtgcatcagttccgggaaacggggttacatcgtgaaaatctgattgttcatcatgagaaatatgacgtgatctgggtttgatttctgttgtatag
|||||||| ||||| || |||||||| |||||||||||||| ||||| || ||||| || ||||||||||| || |||||||| ||||| |||||||||||||||||| ||   |  ||  ||||| |  | || |||||||| | |||| ||||||||        || |||  |||||| | || ||||||  ||||  ||
TATGGTGATGGTGCCGCGAACCAGGGCCAGCTCTTTGAGGCCCTCAATATATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcctgtgccgcttttgggaatcatgattgcatcgtgata-tctgcttgttcattt-----gatgtgatatgatcttgattcgatttcccttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18384669|gb|BM417868.1|BM417868
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|50330691|gb|CO525817.1|CO525817
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|149090058|gb|EE179352.2|EE179352
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|87298771|gb|DY470774.1|DY470774
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|16746039|gb|BM032469.1|BM032469
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|148960114|gb|EE153361.2|EE153361
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACT
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|148962032|gb|EE012834.2|EE012834
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|71328968|gb|DR801171.1|DR801171
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|31350443|gb|CD434800.1|CD434800
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|88757273|gb|DY541414.1|DY541414
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|18384909|gb|BM418108.1|BM418108
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|20300013|gb|BQ162956.1|BQ162956
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|18383963|gb|BM417163.1|BM417163
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGNTTGCGAGAACAACCATT                         ATGGNATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|18384628|gb|BM417827.1|BM417827
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|8401229|gb|BE056863.1|BE056863
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|32847853|gb|CD987534.1|CD987534
EST:     TTCGGCCCTCTGGAAGCTGTCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|18384591|gb|BM417790.1|BM417790
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGACAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|149077420|gb|EE166109.2|EE166109
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|21330275|gb|BQ485656.1|BQ485656
EST:     CTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: CTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|18384480|gb|BM417679.1|BM417679
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAGCCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|74244031|gb|DT651945.1|DT651945
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|67041913|gb|CO468168.1|CO468168
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|149008497|gb|EE040667.2|EE040667
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|18384592|gb|BM417791.1|BM417791
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|148943703|gb|EC888771.2|EC888771
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|91054212|gb|EB164630.1|EB164630
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|22489517|gb|BU049440.1|BU049440
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|18384004|gb|BM417204.1|BM417204
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|148943702|gb|EC888770.2|EC888770
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|211429931|gb|FL330539.1|FL330539
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|18384910|gb|BM418109.1|BM418109
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|18383922|gb|BM417122.1|BM417122
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|94478082|gb|EB707040.1|EB707040
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|18384513|gb|BM417712.1|BM417712
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|211154459|gb|FL355882.1|FL355882
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
EST: gi|149088432|gb|EE177536.2|EE177536
EST:     TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATT                         ATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 215

TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACAAGCGTGGCGACTATGTGCCTGGATTGAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 378

TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACAAGCGTGGCGACTATGTGCCTGGATTGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 477

TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACAAGCGTGGCGACTATGTGCCTGGATTGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 480

TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgt ... tgttgtatagATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACAAGCGTGGCGACTATGTGCCTGGATTGAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTgtgagttcgtgcatcagttccgggaaacggggttacatcgtgaaaatctgattgttcatcatgagaaatatgacgtgatctgggtttgatttctgttgtatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC