Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCATTCTCTCTCGGGGTCGGCTACCGCCGCCGCCGTACGCCAGGTGCCGACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccaccctcttctcttccctagttccctgtctgctgtgcgaaatcgagttctcaaaactctaacctcagactatttgattaatgtgtgtacacatgtacacccttgttcctttaatag

Basic information

species Zea mays
transcript GRMZM2G139683_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211343281|gb|FL146112.1|FL146112
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|211340893|gb|FL146102.1|FL146102
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGATGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|211340892|gb|FL146101.1|FL146101
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTGCGAGAAC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGT-CGAGAAC
EST: gi|211343280|gb|FL146111.1|FL146111
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|71765862|gb|DR963799.1|DR963799
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|211343276|gb|FL146107.1|FL146107
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|28910217|gb|CB331329.1|CB331329
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|26559121|gb|CA831356.1|CA831356
EST:     AGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: AGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|211343275|gb|FL146106.1|FL146106
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|87157028|gb|DY401817.1|DY401817
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|22521504|gb|BU080315.1|BU080315
EST:     TACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|211340894|gb|FL146103.1|FL146103
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|60352751|gb|DN219724.1|DN219724
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|211343278|gb|FL146109.1|FL146109
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|211340891|gb|FL146100.1|FL146100
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
EST: gi|211340890|gb|FL146099.1|FL146099
EST:     GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAA                         ATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC
genomic: GACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccac ... cctttaatagATCTGCCCCTGGTTTCAACCGATTGAACCCCGATGTCCGACGTCGAGAACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTCATTCTCTCTCGGGGTCGGCTACCGCCGCCGCCGTACGCCAGGTGCCGACTGCCGAGACCTTCTCCGATCTGTTTGCCGGCGAAGAGCGCCCGCCAAgtattcccaccctcttctcttccctagttccctgtctgctgtgcgaaatcgagttctcaaaactctaacctcagactatttgattaatgtgtgtacacatgtacacccttgttcctttaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA