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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCGGACGGAGAGCCCATCCCGTCGCCGCTCCGCTCTGTCTCTCCGCCAAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagctttacattccgcgggaaacccgcgccgtttttttggcgcgacaccttcacgtgctcgatgtgatagcagacgtattatatattgtgccgtg...

Basic information

species Zea mays
transcript GRMZM2G139462_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76917142|gb|DV166699.1|DV166699
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211175205|gb|FL094962.1|FL094962
EST:     AAGCGCCGCGCCTGCGCCG-CATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211173537|gb|FL094957.1|FL094957
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|84980665|gb|DW531014.1|DW531014
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|76013765|gb|DT940935.1|DT940935
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|50338057|gb|CO533183.1|CO533183
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211173536|gb|FL094956.1|FL094956
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211175208|gb|FL094965.1|FL094965
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|50326142|gb|CO521268.1|CO521268
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211175204|gb|FL094961.1|FL094961
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211175207|gb|FL094964.1|FL094964
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211175211|gb|FL094968.1|FL094968
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211175206|gb|FL094963.1|FL094963
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211173530|gb|FL094950.1|FL094950
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|86466839|gb|DY233209.1|DY233209
EST:     AAGCGCCGCGCCTGCGCCGCCGTGGGCTCCAGCTCCTCCTCCAACTCAAG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211175215|gb|FL094972.1|FL094972
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211175210|gb|FL094967.1|FL094967
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAMKATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211175214|gb|FL094971.1|FL094971
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211175212|gb|FL094969.1|FL094969
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211173535|gb|FL094955.1|FL094955
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|33467006|gb|CF244055.1|CF244055
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|86468321|gb|DY234691.1|DY234691
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGAAGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211175213|gb|FL094970.1|FL094970
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211173532|gb|FL094952.1|FL094952
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|148960321|gb|EE153577.2|EE153577
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211173531|gb|FL094951.1|FL094951
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
EST: gi|211175202|gb|FL094959.1|FL094959
EST:     AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGG                         AAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC
genomic: AAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagct ... cgtttttcagAAATCAAACGTCACTGATGCTGCCGTTCAGCTTTACATTCGATGAAGATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTCGGACGGAGAGCCCATCCCGTCGCCGCTCCGCTCTGTCTCTCCGCCAAGCGCCGCGCCTGCGCCGCCATGGGCTCCAGCTCCTCCTCCAACTCAGGgtacgcagctttacattccgcgggaaacccgcgccgtttttttggcgcgacaccttcacgtgctcgatgtgatagcagacgtattatatattgtgccgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC