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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTCTCCTCCCCGTCTGTTGAGTCATTACCCGCAGGCGTTTCGTCACCGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATAAAAAAAGgtagctttatgtttccctcttgctccgtcgtcgtcgtcgtcgtcgtcgtcgtcgccgccgccgttgctcgataggatgtttagaaattaactgcttgtgc...

Basic information

species Zea mays
transcript GRMZM2G139372_T05
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149096501|gb|EE182246.2|EE182246
EST:     CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATNNNNNNNG                         GCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
genomic: CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATAAAAAAAGgtagctttat ... cgatgtgcagGCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
EST: gi|148933963|gb|EC877954.2|EC877954
EST:     CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATNNNNNNNG                         GCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
genomic: CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATAAAAAAAGgtagctttat ... cgatgtgcagGCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
EST: gi|149099194|gb|EE185222.2|EE185222
EST:     CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATNNNNNNNG                         GCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
genomic: CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATAAAAAAAGgtagctttat ... cgatgtgcagGCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
EST: gi|149084417|gb|EE173872.2|EE173872
EST:     CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATNNNNNNNG                         GCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
genomic: CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATAAAAAAAGgtagctttat ... cgatgtgcagGCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
EST: gi|149090656|gb|EE179979.2|EE179979
EST:     CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATNNNNNNNG                         GCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
genomic: CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATAAAAAAAGgtagctttat ... cgatgtgcagGCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
EST: gi|148933084|gb|EE286018.2|EE286018
EST:     CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATNNNNNNNG                         GCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
genomic: CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATAAAAAAAGgtagctttat ... cgatgtgcagGCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
EST: gi|149103852|gb|EE289263.2|EE289263
EST:     CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATNNNNNNNG                         GCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
genomic: CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATAAAAAAAGgtagctttat ... cgatgtgcagGCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
EST: gi|149076704|gb|EE165348.2|EE165348
EST:     CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATNNNNNNNG                         GCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
genomic: CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATAAAAAAAGgtagctttat ... cgatgtgcagGCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
EST: gi|149073865|gb|EE162188.2|EE162188
EST:     CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATNNNNNNNG                         GCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
genomic: CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATAAAAAAAGgtagctttat ... cgatgtgcagGCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
EST: gi|149071950|gb|EE160336.2|EE160336
EST:     CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATNNNNNNNG                         GCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC
genomic: CGCTTTCAGAATTCAGACAGAGGTCGGTCGCCAGGAACCCATAAAAAAAGgtagctttat ... cgatgtgcagGCGGCAGCGGGCACAGTCCTCCAGTCCTCGGGTGAGGCGATCGTCGCCGGC