1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTAGTATTCTAGCTCTACCTGCTTTCCCCACTCGTGCTCTCGCCATTCGCTCGAACCCCGAAGAACTGGCAGTGGCAGgtaggttcgcgctcgtctccgccttccagtgattcccctgccgctgcatttcccccggattctctccggtttcaactgccgtaaggtcgtgcctgtggtt...
species | Zea mays |
transcript | GRMZM2G139360_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACTCGTGCTCTCGCCATTCGCTCGAACCCCGAAGAACTGGCAGTGGCAG GTTACTAGAGGATCACTACTTTGAACTCATTAAAGTGTCTAATGATGGCTGEST: gi|71757783|gb|DR955720.1|DR955720
genomic: CACTCGTGCTCTCGCCATTCGCTCGAACCCCGAAGAACTGGCAGTGGCAGgtaggttcgc ... tcttgtgcagGTTACTAGAGGATCACTACTTTGAACTCATTAAAGTGTCTAATGATGGCTG
EST: CGCCATTCGCTCGAACCCCGAAGAACTGGCAGTGGCAG GTTACTAGAGGATCACTACTTTGAACTCATTAAAGTGTCTAATGATGGCTGEST: gi|71435418|gb|DR816468.1|DR816468
genomic: CGCCATTCGCTCGAACCCCGAAGAACTGGCAGTGGCAGgtaggttcgc ... tcttgtgcagGTTACTAGAGGATCACTACTTTGAACTCATTAAAGTGTCTAATGATGGCTG
EST: CTCGCCATTCGCTCGAACCCCGAAGAACTGGCAGTGGCAG GTTACTAGAGGATCACTACTTTGAACTCATTAAAGTGTCTAATGATGGCTGEST: gi|101399831|gb|EB821762.1|EB821762
genomic: CTCGCCATTCGCTCGAACCCCGAAGAACTGGCAGTGGCAGgtaggttcgc ... tcttgtgcagGTTACTAGAGGATCACTACTTTGAACTCATTAAAGTGTCTAATGATGGCTG
EST: CACTCGTGCTCTCGCCATTCGCTCGAACCCCGAAGAACTGGCAGTGGCAG GTTACTAGAGGATCACTACTTTGAACTCATTAAAGTGTCTAATGATGGCTGEST: gi|211381885|gb|FL378668.1|FL378668
genomic: CACTCGTGCTCTCGCCATTCGCTCGAACCCCGAAGAACTGGCAGTGGCAGgtaggttcgc ... tcttgtgcagGTTACTAGAGGATCACTACTTTGAACTCATTAAAGTGTCTAATGATGGCTG
EST: CTCTCGCCATTCGCTCGAACCCCGAAGAACTGGCAGTGGCAG GTTACTAGAGGATCACTACTTTGAACTCATTAAAGTGTCTAATGATGGCTG
genomic: CTCTCGCCATTCGCTCGAACCCCGAAGAACTGGCAGTGGCAGgtaggttcgc ... tcttgtgcagGTTACTAGAGGATCACTACTTTGAACTCATTAAAGTGTCTAATGATGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGTATTCTAGCTCTACCTGCTTTCCCCACTCGTGCTCTCGCCATTCGCTCGAACCCCGAAGAACTGGCAGTGGCAGgtaggttcgcgctcgtctccgccttccagtgattcccctgccgctgcatttcccccggattctctccggtttcaactgccgtaaggtcgtgcctgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC