1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGACCATGAAACAACCATATACACAAAGCGAGGTCAAATGTTTGATGCTTCAGCTGCTAGAGGGTGTAAAATATCTACATGACAATTGGGTACTCCATAGgtaattatctttttttacctttttctgttcacatataatcttgaatctgttttttatgttgttgatagatggccatcttttctacag
species | Zea mays |
transcript | GRMZM2G139038_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGCTGCTAGAGGGTGTAAAATATCTACATGACAATTGTGTACTCCATAG GGATCTGAAGACCTCAAATCTTTTGCTGAATAACCGTGGTGAGTTAAAAATEST: gi|89760369|gb|DY688806.1|DY688806
genomic: CAGCTGCTAGAGGGTGTAAAATATCTACATGACAATTGGGTACTCCATAGgtaattatct ... ttttctacagGGATCTGAAGACCTCAAATCTTTTGCTGAATAACCGTGGTGAGTTAAAAAT
EST: CAGCTGCTAGAGGGTGTAAAATATCTACATGACAATTGGGTACTCCATAG GGATCTGAAGACCTCAAATCTTTTGCTGAATAACCGTGGTGAGTTAAAAAT
genomic: CAGCTGCTAGAGGGTGTAAAATATCTACATGACAATTGGGTACTCCATAGgtaattatct ... ttttctacagGGATCTGAAGACCTCAAATCTTTTGCTGAATAACCGTGGTGAGTTAAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACCATGAAACAACCATATACACAAAGCGAGGTCAAATGTTTGATGCTTCAGCTGCTAGAGGGTGTAAAATATCTACATGACAATTGGGTACTCCATAGgtaattatctttttttacctttttctgttcacatataatcttgaatctgttttttatgttgttgatagatggccatcttttctacag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT