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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTATGATGAGTGATGCTTTTTGCTAATACTTCTACTGTAGGTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAAGTATTGgtgagttatcttctaattttgaccacttttaaatgcacaagaatgctattaaatatcaacacacactacattacttggaagagtaaacaaatgcacagatcaatattaaatgtaggtgatctacctagacatggtacaaattttcaatctgaaacataaatctccatgatggcattttttttgcaaatatgcag

Basic information

species Zea mays
transcript GRMZM2G138676_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138676_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 5'ss of exon 7
TATTTATGATGAGTGATGCTTTTTGCTAATACTTCTACTGTAGGTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAAGTATTGgtgagttatcttctaattttgaccacttttaaatgcacaagaatg-ctattaaatatcaacacacactacattacttggaagagtaaacaaatgcacagatcaatattaaatgtaggtgatctacctagacatggtacaaattttcaatctgaaacataaatctccatgatggcattttttttgcaaatatgcag
                                           |||||||||||||||||||| |||||||| || ||||| || ||||| ||||| ||||| |||| |     ||||| |   |  ||||||| |||||| ||  || ||   |      |||||||   ||   | | |  | |||      |  ||     ||    |   |  ||||   | || |  ||   |   ||  |   |  |     |                                    
-------------------------------------------GTTAACCCACATACACACCAGCTCAAAATATGTGATTTTGGCAGTGCAAAAGTTTTGgtaagttctg----aatttggcagaaatttaaattcacaagcatttctgttttctgaatggacacactgggttttcttgcaagg-aaatgtgaacttaggcaggtagcctacaca--tgatagtcttaaat-tgcagctttttccccgccgaatgtgcag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355062|gb|CD439419.1|CD439419
EST:     AACTCAAAATTTGCGATTTCGGAAGTGCTAAAGTATCG                         TTCAGAGGAGAGCCAAACATCTCCTACATATGCTCAAGGTATTATCGAGCA
genomic: AACTCAAAATTTGCGATTTCGGAAGTGCTAAAGTATTGgtgagttatc ... aaatatgcagGTCAGAGGAGAGCCAAACATCTCCTACATATGCTCAAGGTATTATCGAGCA