1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGAATTCTCAGGCAAACGCAATATATGAGGCTTTTATACCAGAGGGCTACCAGAAGCCACATTCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtttgtggttatctggaaacgatttttttttcccaatggacacaagaaattttgccaagttctttgaagattggtgtctacttgttttctttccaagcttgatctgcagaaggcatttttattgaagcgcgtgatccatattctccctgtcataagttgtcagctaccgaagtatgtatttccattgtttcag
species | Zea mays |
transcript | GRMZM2G138349_T04 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGCCACATTCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAG GTCTAAATATGAGCTGCAGGAATTTCTGAAGCCAAGCTTGCGCATTGTTTCEST: gi|78179014|gb|DV549387.1|DV549387
genomic: CAGAAGCCACATTCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtttgtggtt ... attgtttcagGTCTAAATATGAGCTGCAGGAATTTCTGAAGCCAAGCTTGCGCATTGTTTC
EST: CAGAAGCCACATTCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAG GTCTAAATATGAGCTGCAGGAATTTCTGAAGCCAAGCTTGCGCATTGTTTCEST: gi|12046228|gb|BF728367.1|BF728367
genomic: CAGAAGCCACATTCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtttgtggtt ... attgtttcagGTCTAAATATGAGCTGCAGGAATTTCTGAAGCCAAGCTTGCGCATTGTTTC
EST: CAGAAGCCACATTCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAG GTCTAAATATGAGCTGCAGGAATTTCTGAAGCCAAGCTTGCGCATTGTTTCEST: gi|211245510|gb|FK953342.1|FK953342
genomic: CAGAAGCCACATTCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtttgtggtt ... attgtttcagGTCTAAATATGAGCTGCAGGAATTTCTGAAGCCAAGCTTGCGCATTGTTTC
EST: CAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAG GTCTAAATATGAGCTGCAGGAATTTCTGAAGCCAAGCTTNCKCATTGTTTCEST: gi|6918414|gb|AW399944.1|AW399944
genomic: CAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtttgtggtt ... attgtttcagGTCTAAATATGAGCTGCAGGAATTTCTGAAGCCAAGCTTGCGCATTGTTTC
EST: CAGAAGCCACATTCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAG GTCTAAATATGAGCTGCAGGAATTTCTGAAGCCAAGCTTGCGCATTGTTTC
genomic: CAGAAGCCACATTCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtttgtggtt ... attgtttcagGTCTAAATATGAGCTGCAGGAATTTCTGAAGCCAAGCTTGCGCATTGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATTCTCAGGCAAACGCAATATATGAGGCTTTTATACCAGAGGGCTACCAGAAGCCACATTCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtttgtggttatctggaaacgatttttttttcccaatggacacaagaaattttgccaagttctttgaagattggtgtctacttgttttctttccaagcttgatctgcagaaggcatttttattgaagcgcgtgatccatattctccctgtcataagttgtcagctaccgaagtatgtatttccattgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA