Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCCGTCCTCCTCCGTCCCAAGGCAGTCGCAGTTCACAACTGCGACTAAAAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaaagttagcgtcttttttttctgtactgcataaatggaagttcagatcgcttggtttcgattcgggattcctgagcgcgctgtcctgctcct...

Basic information

species Zea mays
transcript GRMZM2G138176_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211186200|gb|FL226979.1|FL226979
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|149021310|gb|EE045776.2|EE045776
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|71309640|gb|DR791098.1|DR791098
EST:     AACCATCTTATGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AACCATCTT-TGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|76915901|gb|DV166158.1|DV166158
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|148957639|gb|EC903748.2|EC903748
EST:     AACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCG-CTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|211186203|gb|FL226982.1|FL226982
EST:     GATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: GATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|76012671|gb|DT939841.1|DT939841
EST:     AACCTATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AACC-ATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|76918299|gb|DV167237.1|DV167237
EST:     AAACCATCCTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|88757545|gb|DY541686.1|DY541686
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|89253166|gb|DY624952.1|DY624952
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|71433844|gb|DR814894.1|DR814894
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|71445757|gb|DR826807.1|DR826807
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|211188599|gb|FL226988.1|FL226988
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|88757388|gb|DY541529.1|DY541529
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|71450112|gb|DR831162.1|DR831162
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|149109596|gb|EE190280.2|EE190280
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|76019054|gb|DT946224.1|DT946224
EST:     AACCTATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AACC-ATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|74244136|gb|DT652050.1|DT652050
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|149072118|gb|EE160356.2|EE160356
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|71310021|gb|DR791299.1|DR791299
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|78079510|gb|DV507922.1|DV507922
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|91056941|gb|EB167359.1|EB167359
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|211305543|gb|FL417489.1|FL417489
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|91875020|gb|EB404977.1|EB404977
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|149000833|gb|EE038060.2|EE038060
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|71322734|gb|DR798048.1|DR798048
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|148952248|gb|EC898054.2|EC898054
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|93282901|gb|EB675165.1|EB675165
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|50336383|gb|CO531509.1|CO531509
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|211186206|gb|FL226985.1|FL226985
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAATAAGACTGGCTCTGCACTCGGAT
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAA-AAGACTGGCTCTGCACTCGGAT
EST: gi|211186202|gb|FL226981.1|FL226981
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|71774178|gb|DR972058.1|DR972058
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|50329329|gb|CO524455.1|CO524455
EST:     GGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: GGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|74239737|gb|DT647651.1|DT647651
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|211186201|gb|FL226980.1|FL226980
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|6021103|gb|AW066031.1|AW066031
EST:     GCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: GCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|76288557|gb|DV028125.1|DV028125
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|76918592|gb|DV167365.1|DV167365
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|78123919|gb|DV542303.1|DV542303
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|78108354|gb|DV526772.1|DV526772
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|78084632|gb|DV513025.1|DV513025
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|211186207|gb|FL226986.1|FL226986
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|71766165|gb|DR964102.1|DR964102
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
EST: gi|211186205|gb|FL226984.1|FL226984
EST:     AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAG                         GTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA
genomic: AAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 550

CCCCCGTCCTCCTCCGTCCCAAGGCAGTCGCAGTTCACAACTGCGACTAAAAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATAATTTTAAAATGGATAGTGCACAGCAGCCCACTGGGGAATTGAACAATTC


Block sizes: 47 (upstream exon), 43 (downstream exon)
Score: 68

CCCCCGTCCTCCTCCGTCCCAAGGCAGTCGCAGTTCACAACTGCGACTAAAAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATAATTTTAAAATGGATAGTGCACAGCAGCCCACTGGGGAATTGAACAATTC


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 10

CCCCCGTCCTCCTCCGTCCCAAGGCAGTCGCAGTTCACAACTGCGACTAAAAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATAATTTTAAAATGGATAGTGCACAGCAGCCCACTGGGGAATTGAACAATTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 305

CCCCCGTCCTCCTCCGTCCCAAGGCAGTCGCAGTTCACAACTGCGACTAAAAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaa ... atgattgcagGTTAAGTTGCCTTTTCGATTCTCAGAAAAAGACTGGCTCTGCACTCGGATAATTTTAAAATGGATAGTGCACAGCAGCCCACTGGGGAATTGAACAATTC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCCCGTCCTCCTCCGTCCCAAGGCAGTCGCAGTTCACAACTGCGACTAAAAACCATCTTTGGGGCCCTTCGCCGCGATTTGCTTCGCTTCTCGGACTAGgtaagccgaaagttagcgtcttttttttctgtactgcataaatggaagttcagatcgcttggtttcgattcgggattcctgagcgcgctgtcctgctcct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgctcc