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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTTTCATGGGGGCAGCATAAAAGCCTCTTCGGTTCTTCCCCTAGCTCTGCCTCGCGGCAAGTCCCCCTCCGCTACGTTCGCCATGGCTCGCAACAGGgtgcgttctcgtcttacctccattgcttgcgcattaaatgcatttccctgtttcgaccaatcacaccttctaaataacgcgccacacatttgtttggctt...

Basic information

species Zea mays
transcript GRMZM2G137968_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101387982|gb|EB816005.1|EB816005
EST:     TGCCTCGCGGCAAGTCCCCCTCCGCTACGTTCGCCATGGCTCGCAACAGG                         GAAGTGGTGATTTTGCTGTTGGATGTTGGGCCTTCGATGCATGGAGTGCTG
genomic: TGCCTCGCGGCAAGTCCCCCTCCGCTACGTTCGCCATGGCTCGCAACAGGgtgcgttctc ... catttcttagGAAGTGGTGATTTTGCTGTTGGATGTTGGGCCTTCGATGCATGGAGTGCTG
EST: gi|88752186|gb|DY536327.1|DY536327
EST:     TGCCTCGCGGCAAGTCCCCCTCCGCTACGTTCGCCATGGCTCGCAACAGG                         GAAGTGGTGATTTTGCTGTTGGATGTTGGGCCTTCGATGCATGAAGTGCTG
genomic: TGCCTCGCGGCAAGTCCCCCTCCGCTACGTTCGCCATGGCTCGCAACAGGgtgcgttctc ... catttcttagGAAGTGGTGATTTTGCTGTTGGATGTTGGGCCTTCGATGCATGGAGTGCTG
EST: gi|89250569|gb|DY622355.1|DY622355
EST:     TGCCTCGCGGCAAGTCCCCCTCCGCTACGTTCGCCATGGCTCGCAACAGG                         GAAGTGGTGATTTTGCTGTTGGATGTTGGGCCTTCGATGCATGGAGTGCTG
genomic: TGCCTCGCGGCAAGTCCCCCTCCGCTACGTTCGCCATGGCTCGCAACAGGgtgcgttctc ... catttcttagGAAGTGGTGATTTTGCTGTTGGATGTTGGGCCTTCGATGCATGGAGTGCTG