Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGCCCACTCCATCCCGGCTCCGTCGTCGCGTGCCATCCTAGGGTTTCTTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttaccacatcttcgtccccctcctccttcttctccagcccggttcctcgccgccccgcccccaggccccaggcagcttgctgcgtgctagatcga...

Basic information

species Zea mays
transcript GRMZM2G137930_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33467853|gb|CF244902.1|CF244902
EST:     TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAG                         GTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
genomic: TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttacc ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
EST: gi|211293810|gb|FL235622.1|FL235622
EST:     TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAG                         GTTGTCTTGATGGCGCCCGCTGTA
genomic: TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttacc ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTA
EST: gi|211300235|gb|FL235671.1|FL235671
EST:     TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAG                         GTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
genomic: TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttacc ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
EST: gi|211293814|gb|FL235626.1|FL235626
EST:     TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAG                         GTTGTCTTGATGGCGCC-GCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
genomic: TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttacc ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
EST: gi|211298091|gb|FL235655.1|FL235655
EST:     TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAG                         GTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
genomic: TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttacc ... tccttggcagGTTGTCTTGATGGCGCCCGCTGTAGAAGCCGTGAAGGAGACAGGCACCTTC
EST: gi|211300229|gb|FL235665.1|FL235665
EST:     TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAG                         GTTGTCTTGAT
genomic: TTTCCCCGTCGGCGCCTCCCCAGATTTGGCCGCCGCCGCCGCTGACCCAGgtgcgttacc ... tccttggcagGTTGTCTTGAT