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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGATGTTTCACAAACGCGTGAGCGGCTCGCCCTCCTCTCCAGTCCCTCCTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgtctccggtccagtgcaatcttgtcttctttttggatttgtgatcgacgatgatgtagtatgtagcaaagtgtttgcttggcatgtgggctcaaggcgtaagtaaggatcagtctagaggtttggttgccaagttcagtgcactacgctgacactccctcctctccctgcgtgcactgctgctag

Basic information

species Zea mays
transcript GRMZM2G137868_T05
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148957248|gb|EC903268.2|EC903268
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|71764610|gb|DR962547.1|DR962547
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGGGGAACTACGTGAATGGC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGG-ACTACGTGTATGGC
EST: gi|78109038|gb|DV527455.1|DV527455
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|76294078|gb|DV033646.1|DV033646
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCATCTAGCTACCACAG                         TACCAGCAGCAAGAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|71437747|gb|DR818797.1|DR818797
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|148959061|gb|EE010556.2|EE010556
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|93014857|gb|EB640377.1|EB640377
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|149075108|gb|EE163598.2|EE163598
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|33467631|gb|CF244680.1|CF244680
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|148938194|gb|EC882479.2|EC882479
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|76918900|gb|DV167499.1|DV167499
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTA-C-C--                         -A-CAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|37418744|gb|CF647044.1|CF647044
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCATCTAGCTACCACAG                         TACCAGCAGCAAGAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|211445898|gb|FL403745.1|FL403745
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAG------C--                         TACCA-CAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|78115967|gb|DV534355.1|DV534355
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCATCTAGCTACCACAG                         TACCAGCAGCAAGAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|211376270|gb|FL028048.1|FL028048
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|211501487|gb|FL028051.1|FL028051
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|74243688|gb|DT651602.1|DT651602
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAG                         TACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
EST: gi|149008924|gb|EE041144.2|EE041144
EST:     CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTA-C-C--                         -A-CAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC
genomic: CTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgt ... ctgctgctagTACCAGCAGCAATAAGCTAATCAGCTACGATGGCGGACTACGTGTATGGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGATGTTTCACAAACGCGTGAGCGGCTCGCCCTCCTCTCCAGTCCCTCCTCCCTCCGGTCCGCACAGGGGAGCAGCCGGCAGCAGCTAGCTACCACAGgtacgcctgtctccggtccagtgcaatcttgtcttctttttggatttgtgatcgacgatgatgtagtatgtagcaaagtgtttgcttggcatgtgggctcaaggcgtaagtaaggatcagtctagaggtttggttgccaagttcagtgcactacgctgacactccctcctctccctgcgtgcactgctgctag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT