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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTACCTGCAGCACATCCACGACCTGCAGCTCCAGATCCGGCAGAAGACCCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAGgtagcatttcttctcgattacgccccaaacccttgaatcgatgtgcccctcccgcaccgcggtttggtgtggtgaaccctttggtggaaaccctaccttt...

Basic information

species Zea mays
transcript GRMZM2G137528_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137528_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 1
TACTACCTGCAGCACATCCACGACCTGCAGCTCCAGATCCGGCAGAAGACCCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAGgtagcatttcttctcgattacgccccaaacccttgaatcgatgtgcccctcccgcaccg--cggtttggtgtggtgaaccctttggtggaaaccctaccttt
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||  | |  |  || | |    | ||       ||    | ||| | |  |  |    |  ||  ||||   || |    | |||||||||| ||||  || 
TACTACCTGCAGCACATCCACGACCTGCAGCTCCAGATCCGGCAGAAGACGCACAACCTCAACCGCCTCGAGGCCCAGCGCAACGACCTCAACTCCCGAGgtgacgtaacc-ctagctgtatcaccgtgtgggtgcgatgctgtccgcggcttgatgtggccgaattggatcggcgcgtgcgttggtggaaaacctaggtt-

upper sequence: GRMZM2G137528_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 5'ss of exon 1
TACTACCTGCAGCACATCCACGACCTGCAGCTCCAGATCCGGCAGAAGACCCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAGgtagcatttcttctcgattacgccccaaacccttgaatcgatgtgcccctcccgcaccgcggtt-tggtgtggtgaaccctttggtggaaaccctaccttt-
|||||||| || ||||||||||| || ||||| ||| | || ||||||| ||| || ||||| || || || ||||||||||| || ||||| |||||||||    |   | |   |   |   |||||||||    | ||||      |    ||    | |  | || | ||||  | | |  |           |    
TACTACCTCCAACACATCCACGATCTCCAGCTACAGGTTCGCCAGAAGAGCCATAATCTCAATCGCCTTGAAGCCCAGCGCAACGATCTCAATTCCCGAGgtt-tttccatcccaaaaccctaaccaaaccctaattttgatgctatgatttt-cagaatgatcattgtattgtgacgcttataattttgttatgtgcagaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32828073|gb|CD967751.1|CD967751
EST:     CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAGgtagcatttc ... ttaatttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: gi|211028259|gb|FL437884.1|FL437884
EST:     CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAGgtagcatttc ... ttaatttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: gi|32805431|gb|CD957665.1|CD957665
EST:     CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAGGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAGgtagcatttc ... ttaatttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: gi|9742895|gb|BE519043.1|BE519043
EST:     CTATATTCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
genomic: CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAGgtagcatttc ... ttaatttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG
EST: gi|32827753|gb|CD967431.1|CD967431
EST:     CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAG                         TTAGAATGCTCAGGGAAGAGTTGCAGTTGCTCCAAGAGCCTGGCTCATATG
genomic: CCACAACCTCAACCGTCTCGAGGCCCAGCGCAATGACCTCAACTCCCGAGgtagcatttc ... ttaatttcagTTAGAATGCTCAGGGAAGAGTTGCAGTTGCTTCAAGAGCCTGGCTCATATG