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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCGGGGCTTGGTCTACGCCTTGCGCAGGCCTTCTTCGCAGCCGCTGCGCTCGCCGTCATGGCGTCCACCAACGACTTCCCGTCCGTCTCTGCCTTCAGgtccaacaaataccttttcttgtggataccatcttttttaaaatctgaaccgacttatttgggttctttgtatgcctggattagaaatcgaagtattctg...

Basic information

species Zea mays
transcript GRMZM2G136901_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G136901_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g20250.1 (Oryza sativa), 5'ss of exon 1
CTGCGGGGCTTGGTCTACGCCTTGCGCAGGCCTTCTTCGCAGCCGCTGCGCTCGCCGTCATGGCGTCCACCAACGACTTCCCGTCCGTCTCTGCCTTCAGgtccaacaaataccttttcttgtggataccatct--tttttaaaatctgaaccgacttatttg--ggttctttgtatgcctggattagaaatcgaagtattctg
| |  || || || || ||||| | ||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||| |||||||| |||||| ||| |  |   |     ||| | ||||| |  | |           ||||  ||  ||    |      ||||||      | |  | ||||| |  || |    
CCGGCGGCCTCGGCCTCCGCCTCGTGCAGGCCTTCTTCGCCGCCGCCGCGCTCGCCGTCATGGCCTCCACCGACGACTTCCCCTCCGTCTCCGCCTTCTGgtgcgcccgctcgagcttcct-tggattctgtttacccccctttgtctggtccccctctcctaccaaatctttgcccttttaggattgaaattggtgtgtg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211372489|gb|FL433669.1|FL433669
EST:     CTCGCCGTCATGGCGTCCACCAACGACTTCCCGTCCGTCTCTGCCTTCAG                         GGTGGAGTTTGAAATAGAGGATGAGATAGCAGATCTGCTGGAGATGGCCTT
genomic: CTCGCCGTCATGGCGTCCACCAACGACTTCCCGTCCGTCTCTGCCTTCAGgtccaacaaa ... ttgtttatagGGTGGAGTTTGAAATAGAGGATGAGATAGCAGATCTGCTGGAGATGGCCTT
EST: gi|211462304|gb|FL096438.1|FL096438
EST:     CTCGCCGTCATGGCGTCCACCAACGACTTCCCGTCCGTCTCTGCCTTCAG                         GGTGGAGTTTGAAATAGAGGATGAGATAGCAGATCTGCTGGAGATGGCCTT
genomic: CTCGCCGTCATGGCGTCCACCAACGACTTCCCGTCCGTCTCTGCCTTCAGgtccaacaaa ... ttgtttatagGGTGGAGTTTGAAATAGAGGATGAGATAGCAGATCTGCTGGAGATGGCCTT