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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCAGCACACGCTGCGGAGCCTCTGCACCGGCGACGCCCCGCAGTGGGTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagctgatctcctctcagttctcactcagatccctatctgctaatgcgcattctaatcgcgaccgtgtttcttcgcttaataacaacctgtgcttgatcag

Basic information

species Zea mays
transcript GRMZM2G136831_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G136831_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g12740.1 (Oryza sativa), 5'ss of exon 1
TGCTGCAGCACACGCTGCGGAGCCTCTGCACC---GGCGACGCCCCGCAGTGGGTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgt--gcgtgagctgatctcctctcagtt---ctcactcagatccctat-ctgctaatgcgcattctaatcgcgaccgtgtttcttcgcttaataacaacc---tgtgcttgatcag-
   |||||||||||||||||||||||||||||   ||||||| | | |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||  ||  ||| | ||| | | |   ||   |   | | ||| |   | |||||  ||    ||    |   ||  || |||||  | ||  |     |    |  | |||| |   
---TGCAGCACACGCTGCGGAGCCTCTGCACCAGCGGCGACGACTCCCAGTGGGTCTACGCCGTCTTCTGGCGCATCCTCCCCCGCAACTACCCTCCCCCAAAgtgagcaagagataatcacgtttagtttagccatgcgctgatgctgctgctgctcctgatgctttggctaatgattgtttttctgggtttgttggttgctaaattcggttgacccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101386485|gb|EB815259.1|EB815259
EST:     GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA                         ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
EST: gi|76933211|gb|DV173372.1|DV173372
EST:     GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCTAA                         ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCAGAGGGAACA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACA
EST: gi|149070786|gb|EE159197.2|EE159197
EST:     GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA                         ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
EST: gi|74238082|gb|DT645996.1|DT645996
EST:     GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA                         ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
EST: gi|148980599|gb|EE027224.2|EE027224
EST:     GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA                         ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
EST: gi|71435285|gb|DR816335.1|DR816335
EST:     GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA                         ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
EST: gi|71429782|gb|DR810832.1|DR810832
EST:     GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA                         ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
EST: gi|76287078|gb|DV026646.1|DV026646
EST:     GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA                         ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
EST: gi|149104906|gb|EE290376.2|EE290376
EST:     GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA                         ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
EST: gi|78119598|gb|DV537982.1|DV537982
EST:     GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA                         ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
EST: gi|94477121|gb|EB706079.1|EB706079
EST:     GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA                         ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
EST: gi|78111427|gb|DV529824.1|DV529824
EST:     GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAA                         ATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA
genomic: GTCTACGCCGTCTTCTGGCGCATCCTGCCCCGGAACTACCCGCCCCCCAAgtgcgtgagc ... gcttgatcagATGGGATCTCCCTGGCGCCGCGTACGACAGGACCCGAGGGAACAGGAGGAA