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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTGATCACAGTCAATGGGGTCGTTTTTCTCAGTTTTCCAAGGATAAGgtattcagaatattattctgcatttggtacttgtatcttttctctcactatagcttgctaagaacatgttgttctatttttttttgtgagagcacatgtttatgagcactaagatggtttccctttgtaatgtgtttcag

Basic information

species Zea mays
transcript GRMZM2G136803_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G136803_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g46790.1 (Oryza sativa), 5'ss of exon 11
--------------------------------------------------CATCTGATCACAGTCAATGGGGTCGTTTTTCTCAGTTTTCCAAGGATAAGgtat--tcagaatattattctgcatttggtacttgtatcttttctctcactatagcttgctaagaacatgttgttctatttttttttgtgagagcacatgtttatgagcactaagatggtttccctttgtaatgtgtttcag
                                                  |||| |||||||| |||||||| ||||||||||||||||||||||| |||||    |||| |||  || ||  |  |  |  ||       | || ||| |     ||  |     | |  ||             | |  | | | ||||| | |  |     ||||| |    | |||||| | ||||||
GTGGTTGAAACCATATGCTGCATTTTGTTTTCTGCGGGACTTCTTTGAGACATCAGATCACAGCCAATGGGGCCGTTTTTCTCAGTTTTCCAAGGAGAAGgtgcgatcagtataacatgctaaacattct-tttaagaaaatcctatcattcggttttatt-----ctttctgagaggcgagaccatatatgggaaaatgttcaagtactaagtgatggctgtt-tctgtaatttctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091048|gb|DV519422.1|DV519422
EST:     CATCTGATCACAGTCAATGGGGTCGTTTTTCTCAGTTTTCCAAGGATAAG                         CTTGACAAACTTATTTGTGAAGGTACTTTACACCATGACATTATACGTTTT
genomic: CATCTGATCACAGTCAATGGGGTCGTTTTTCTCAGTTTTCCAAGGATAAGgtattcagaa ... tgtgtttcagCTTGACAAACTTATTTGTGAAGGTACTTTACACCATGACATTATACGTTTT