1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCGCCGCCCCCTCGCAGTCCCTCTCTCCCTCCTCCGCCTCCGTACACATTCCCCATTCGACCCAGCGCGGCCGCCTCGCCGCAGCTCCACCACTGCCACgtaaggcacaaatacattcctcccctctcttttctctttttttgtaaactcgtgaattcagctctataggtttttataaggtaggtggttgaatagttca...
species | Zea mays |
transcript | GRMZM2G136680_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCCCATTCGACCCAGCGCGGCCGSCTCGCCGCAGCTCCACCACTGCCAC GTTGTGTAGCTAGTCCAACCATTGCTAATGTGAAAGACCAAACTGAGGCTGEST: gi|9461883|gb|BE453952.1|BE453952
genomic: TCCCCATTCGACCCAGCGCGGCCGCCTCGCCGCAGCTCCACCACTGCCACgtaaggcaca ... ttaattacagGTTGTGTAGCTAGTCCAACCATTGCTAATGTGAAAGACCAAACTGAGGCTG
EST: TCCCCATTCGACCCAGCGCGGCCGCCTCGCCGCAGCTCCACCACTGCCAC GTTGTGTAGCTAGTCCAACCATTGCTAATGTGAAAGACCAAACTGAGGCTGEST: gi|211249486|gb|FL157171.1|FL157171
genomic: TCCCCATTCGACCCAGCGCGGCCGCCTCGCCGCAGCTCCACCACTGCCACgtaaggcaca ... ttaattacagGTTGTGTAGCTAGTCCAACCATTGCTAATGTGAAAGACCAAACTGAGGCTG
EST: TCCCCATTCGACCCAGCGCGGCCGCCTCGCCGCAGCTCCACCACTGCCAC GTTGTGTAGCTAGTCCAACCATTGCTAATGTGAAAGACCAAACTGAGGCTGEST: gi|211019675|gb|FL390361.1|FL390361
genomic: TCCCCATTCGACCCAGCGCGGCCGCCTCGCCGCAGCTCCACCACTGCCACgtaaggcaca ... ttaattacagGTTGTGTAGCTAGTCCAACCATTGCTAATGTGAAAGACCAAACTGAGGCTG
EST: TCCCCATTCGACCCAGCGCGGCCGCCTCGCCGCAGCTCCACCACTGCCAC GGTGTGTAGCTAGTCCAACCATTGCTAATGTGAAAAGAC-AAACTGAAGCTEST: gi|9566274|gb|BE475783.1|BE475783
genomic: TCCCCATTCGACCCAGCGCGGCCGCCTCGCCGCAGCTCCACCACTGCCACgtaaggcaca ... ttaattacagGTTGTGTAGCTAGTCCAACCATTGCTAATGTGAAA-GACCAAACTGAGGCT
EST: TCCCCATTCGACCCAGCGCGGCCGCCTCGCCGCAGCTCCACCACTGCCAC GTTGTGTAGCTAGTCCAACCATTGCTAATGTGAAAGACCAAACTGAGGCTG
genomic: TCCCCATTCGACCCAGCGCGGCCGCCTCGCCGCAGCTCCACCACTGCCACgtaaggcaca ... ttaattacagGTTGTGTAGCTAGTCCAACCATTGCTAATGTGAAAGACCAAACTGAGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCCGCCCCCTCGCAGTCCCTCTCTCCCTCCTCCGCCTCCGTACACATTCCCCATTCGACCCAGCGCGGCCGCCTCGCCGCAGCTCCACCACTGCCACgtaaggcacaaatacattcctcccctctcttttctctttttttgtaaactcgtgaattcagctctataggtttttataaggtaggtggttgaatagttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcccc