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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCGCCGGGAGATAAACCGACCGGACCCCTGACTGCGACCCGCAGCTGCTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattattaatcctctctactttccttcttcgttcgtctattctgcgcagtccgtcgtggattttggaacttccgacagaaattccgccggtgcgtatg...

Basic information

species Zea mays
transcript GRMZM2G136178_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60351482|gb|DN218455.1|DN218455
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
EST: gi|211324170|gb|FK968426.1|FK968426
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
EST: gi|211324166|gb|FK968422.1|FK968422
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
EST: gi|211324168|gb|FK968424.1|FK968424
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCSGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
EST: gi|18660487|gb|BM500887.1|BM500887
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
EST: gi|5566772|gb|AI881638.1|AI881638
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
EST: gi|211324169|gb|FK968425.1|FK968425
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
EST: gi|211324167|gb|FK968423.1|FK968423
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
EST: gi|211324165|gb|FK968421.1|FK968421
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
EST: gi|30160552|gb|CB924281.1|CB924281
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
EST: gi|32863640|gb|CF003322.1|CF003322
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
EST: gi|40287130|gb|CK327522.1|CK327522
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
EST: gi|211324171|gb|FK968427.1|FK968427
EST:     CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAA                         TTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA
genomic: CTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattatta ... acctgaacagTTCTTATAAAGCATCATCATCACCACTTGTGATGGGTGGAAGCCAGTACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCCGCCGGGAGATAAACCGACCGGACCCCTGACTGCGACCCGCAGCTGCTCCTGCTTCCGATCCGAACTTCTCTCGCCCGCCGGTTCTTCGCGAGCAAgtaattattaatcctctctactttccttcttcgttcgtctattctgcgcagtccgtcgtggattttggaacttccgacagaaattccgccggtgcgtatg

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