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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTCCGGCTATCCGTTCCAGGACTTCGGATTAAGAGGCGACGAGATGATGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattgtttttaggcggatgggtttcttgaatcggtcctgcggctggtggtgttttttttttattgttgctagtccatttaagcttcttacacata...

Basic information

species Zea mays
transcript GRMZM2G135816_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211434924|gb|FK975628.1|FK975628
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|76293057|gb|DV032625.1|DV032625
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|71449821|gb|DR830871.1|DR830871
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|211434925|gb|FK975629.1|FK975629
EST:     TGCGACGCTGCGTCTCGGCGTTGGGCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCC
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCC
EST: gi|211434923|gb|FK975627.1|FK975627
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|211434917|gb|FK975621.1|FK975621
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|78090418|gb|DV518792.1|DV518792
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|211434922|gb|FK975626.1|FK975626
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|148939358|gb|EC883884.2|EC883884
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|148930609|gb|EE285291.2|EE285291
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|211434920|gb|FK975624.1|FK975624
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|31350206|gb|CD434563.1|CD434563
EST:     GCGACGCTGTC-TCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: GCGACGCTG-CGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|60672651|gb|DN475349.1|DN475349
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|62525817|gb|DN828465.1|DN828465
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|91054282|gb|EB164700.1|EB164700
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|71434991|gb|DR816041.1|DR816041
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|149048406|gb|EE048314.2|EE048314
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|32859388|gb|CD999069.1|CD999069
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCTGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
EST: gi|148946522|gb|EC891834.2|EC891834
EST:     TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACG                         GTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA
genomic: TGCGACGCTGCGTCTCGGCGTTGGCCCGCCGCCGCCGTCCAGATCGCACGgtgagtattg ... acaattgcagGTTGATACTATGAAGGCACGATTCCAATGTTTGGTTAACATTTCCTCTTCA