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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCCAGTGCGCGTGCCGCCGGCGCCATGGCCGCGCCACCGCCGTCGCCAGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgcgctaccgcctccctccctctcccgtcgatgcgatcttctagctccagattgcatctccttcttcttcctccttcggccagggcagaatggctcctcgcgggctgcggttttgtgctcaaaggcgcgatctttacgctcgggatggcttcgttacag

Basic information

species Zea mays
transcript GRMZM2G135568_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71757755|gb|DR955692.1|DR955692
EST:     AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG                         GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: gi|211033696|gb|FL002057.1|FL002057
EST:     AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG                         GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: gi|211036134|gb|FL002061.1|FL002061
EST:     AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG                         GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: gi|149061139|gb|EE157399.2|EE157399
EST:     AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG                         GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: gi|149083911|gb|EE173287.2|EE173287
EST:     AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG                         GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: gi|211036133|gb|FL002060.1|FL002060
EST:     AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG                         GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: gi|211033697|gb|FL002058.1|FL002058
EST:     AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG                         GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: gi|211036135|gb|FL002062.1|FL002062
EST:     AG-MCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG                         GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
EST: gi|211033698|gb|FL002059.1|FL002059
EST:     AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAG                         GAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT
genomic: AGACCAAACCTACTAGCAGCGCGTCGGGGGTGCACCTGCGGCCGATCTAGgttggtgcgc ... ttcgttacagGAGACAGGGATTTCTTCTCGTCCTGTCCTGTGGATTATTACGGGCCTGGAT