Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGCGCCCACCATGGCCATGGCGACGGCCCTCCGCAAGCTCTCCGCCAACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacaccgactgctgcttcttgttcttattatcgtggcacggcgccacggcggtcatctgtcattgtctttgtcttctaccctacccacccctcgaaagaaaacaaacaaagaaagcacgactcatgatccgttcttctgatttgatttgatttgtttttttttgtgtgcgcgcag

Basic information

species Zea mays
transcript GRMZM2G135283_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135283_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 1
CGACGCGCCCACCATGGCCATGGCGACGGCCCTCCGCAAGCTCTCCGCCAACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacaccgactgctgcttcttgttcttattatcgtggcacggcgccacggcggtcatctgtcattgtctttgtcttctaccctacccacccctcgaaagaaaacaaacaaagaaagcacgactcatgatccgttcttctgatttgatttgatttgtttttttttgtgtgcgcgcag
|  | ||||||||||||||||||||||||| ||||||||||||||| || |||| || |||||||||||||||||||||||||| ||||||||||||||||| |  | |    | || | | || |  |||                           || | |  |||| | | || | | ||||        || || | |                   |   | | ||||||||    |||| | || | || ||    | | |           
CCGCTCGCCCACCATGGCCATGGCGACGGCGCTCCGCAAGCTCTCCTCCGACGCCCTCCGCCGCCAGCCGCTCTCCCGCATCACCCCGCTCTACTACATGgttccgctcttcttcctccattttttcttta---------------------------atttttttttgtttatatcgt-tgccct--------cttgagaaa------------------tggtgcttaatccgttccatggattggtttgggttcgtgcgctctcgcag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211286152|gb|FL173733.1|FL173733
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286141|gb|FL173722.1|FL173722
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379736|gb|FL173736.1|FL173736
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379741|gb|FL173741.1|FL173741
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|21987802|gb|BQ779330.1|BQ779330
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211284346|gb|FL173719.1|FL173719
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|149078907|gb|EE167727.2|EE167727
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211382375|gb|FL173752.1|FL173752
EST:     ACGCTCTGSGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCMTTCMGGCGAC-GAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379738|gb|FL173738.1|FL173738
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379739|gb|FL173739.1|FL173739
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286153|gb|FL173734.1|FL173734
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379748|gb|FL173748.1|FL173748
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286143|gb|FL173724.1|FL173724
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|148973319|gb|EE024404.2|EE024404
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|149012532|gb|EE042603.2|EE042603
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379742|gb|FL173742.1|FL173742
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|89761747|gb|DY689638.1|DY689638
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAAAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|148946029|gb|EC891328.2|EC891328
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|149048905|gb|EE048404.2|EE048404
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379749|gb|FL173749.1|FL173749
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286154|gb|FL173735.1|FL173735
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|148958252|gb|EC904466.2|EC904466
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379740|gb|FL173740.1|FL173740
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCTCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379747|gb|FL173747.1|FL173747
EST:     ACGCTCTGSSCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGAC-GAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379745|gb|FL173745.1|FL173745
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379746|gb|FL173746.1|FL173746
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286148|gb|FL173729.1|FL173729
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|71299012|gb|DR785498.1|DR785498
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|148930308|gb|EE284699.2|EE284699
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379743|gb|FL173743.1|FL173743
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|148969981|gb|EE020895.2|EE020895
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286151|gb|FL173732.1|FL173732
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211284347|gb|FL173720.1|FL173720
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286145|gb|FL173726.1|FL173726
EST:     ACGCTCTGSSCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGAC-GAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211382374|gb|FL173751.1|FL173751
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|149081312|gb|EE170425.2|EE170425
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379744|gb|FL173744.1|FL173744
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|148947246|gb|EC892606.2|EC892606
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379750|gb|FL173750.1|FL173750
EST:     ACGCTCTG-SCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGAC-GAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211379737|gb|FL173737.1|FL173737
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|149089957|gb|EE179246.2|EE179246
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|148945831|gb|EC891120.2|EC891120
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
EST: gi|211286140|gb|FL173721.1|FL173721
EST:     ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATG                         GCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC
genomic: ACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 39 (downstream exon)
Score: 144

CGACGCGCCCACCATGGCCATGGCGACGGCCCTCCGCAAGCTCTCCGCCAACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC


Block sizes: 47 (upstream exon), 39 (downstream exon)
Score: 115

CGACGCGCCCACCATGGCCATGGCGACGGCCCTCCGCAAGCTCTCCGCCAACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC


Block sizes: 47 (upstream exon), 39 (downstream exon)
Score: 86

CGACGCGCCCACCATGGCCATGGCGACGGCCCTCCGCAAGCTCTCCGCCAACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC


Block sizes: 47 (upstream exon), 39 (downstream exon)
Score: 163

CGACGCGCCCACCATGGCCATGGCGACGGCCCTCCGCAAGCTCTCCGCCAACGCTCTGCGCCGCCAGCCGCTCTCCCGCATCACGCCGCTCTACTACATGgtacgacacc ... gtgcgcgcagGCGTCCCTTCCGGCGACGGAGGAGAGATCCGGAATCACC